Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33104 123 5e-23 seq18371 107 4e-18 seq10981 107 4e-18 >seq33104 Length=5523 Score = 123 bits (136), Expect = 5e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | ||||| || | ||| || || || || ||||| |||||||||||||| Sbjct 3258 ACCACCTCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGA 3199 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || ||||| ||||| || | || |||||||| || || Sbjct 3198 AAGTGTACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGG 3139 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||||||| || ||||||| || ||||| ||||| || ||| | || || || Sbjct 3138 AATGCCTTCCTTATCCTGGATCTTTGTCTTAACATTGTCAATTGTGTCACTTGGCTCGAC 3079 Query 82763 TTCCAAAGTTATCGTC 82778 || | ||||||||| Sbjct 3078 ATCGAGCGTTATCGTC 3063 >seq18371 Length=23815 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || || || || ||||| ||||| || || ||||| |||| | | || Sbjct 23791 ACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCC 23732 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||||||||| || ||||| ||||| |||||||| || || || || ||||| Sbjct 23731 ATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTT 23672 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||||| || || || ||||| || || | || || || || | || || Sbjct 23671 GTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGAT 23612 Query 82775 CGTCTTG 82781 |||| || Sbjct 23611 CGTCCTG 23605 >seq10981 Length=11828 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || || || || ||||| ||||| || || ||||| |||| | | || Sbjct 2391 ACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCC 2332 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| ||||| || ||||| ||||| ||||||||||| || || || ||||| Sbjct 2331 ATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTT 2272 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||||| || || || ||||| || || | || || || || | || || Sbjct 2271 GTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGAT 2212 Query 82775 CGTCTTG 82781 |||| || Sbjct 2211 CGTCCTG 2205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981186995892388