Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq48315 239 4e-58 seq24354 163 3e-35 seq18597 122 8e-23 seq9453 114 1e-20 seq20946 111 2e-19 seq3706 86.0 6e-12 >seq48315 Length=10477 Score = 239 bits (264), Expect = 4e-58 Identities = 499/738 (68%), Gaps = 9/738 (1%) Strand=Plus/Minus Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || ||| || |||| | |||| |||| |||||| || ||||| || ||||||| Sbjct 2351 TAGAGCGCCTTGAACTCGGCGCCCCAGCACGTGTCGAGCCCCTTGCACTCGTTCGGGCAC 2292 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||||| ||| | |||| || | || | || ||| ||||| || || | ||||||| Sbjct 2291 ATGAGCGTCCAGTCCCCGTTCGTCTGGACCCTCTCCATGAACAGGTCCGGGATCCAGAGC 2232 Query 149178 GCGTACATGAGGTCGCGCGCCTTG-CAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAG 149236 ||||| | ||||| | |||| | | ||| || || ||| | |||| ||| Sbjct 2231 GCGTAGAACAGGTCCCTCGCCCTCTCCATCT-CGTTCCCGTGGTTCTTCCTAAGGTCGAG 2173 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT 149296 | | ||| |||||||||||||||||||| |||||| |||||| || ||||| | ||| Sbjct 2172 GAAGGCGAAGATGTCCGCGTGCCACGGCTCGATGTACGCCGCGATCGATCCCTTCCTCTT 2113 Query 149297 ---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 ||| ||||||||||||| ||| || ||||||| || || || | ||| || | || Sbjct 2112 CCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTTGAAGACGCGGAGCATGGGCACGAT 2053 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGC 149411 ||| ||| |||||||| || | ||| |||| || ||| || || || Sbjct 2052 GCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACGAC--GCGGACGCGCGGACGTTCGAG 1995 Query 149412 ACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAG 149471 | | | |||||| || || ||||||| |||| ||||||||| |||||| | Sbjct 1994 ATGGACAGGCCGATCCCCCCCGCGTACTTGCTGATGACCGCGCAGTTCTTGAGCGTGTCG 1935 Query 149472 TAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGA 149531 || ||||| |||||| ||| | | | | | ||| ||||| |||| ||||| Sbjct 1934 TATATGCCGTCGATGGAGTCCTCCCTGACGCACGTCAGGAAGCAGCTCGACATCTGCGGG 1875 Query 149532 AAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATC 149591 |||| ||||| ||||| ||||| ||||||| || || | |||||| | Sbjct 1874 TTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTGGCGTGGGTGAAGAACCGCTGGCTGAGG 1815 Query 149592 ATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGC 149651 | | ||||| |||||| || | || ||||| | || || || | ||||||||| Sbjct 1814 AGGTTGTACGTCTCGAGGACCCTCTCGATGTCGCCCATGTGTATCCCGACCGCGACGCGC 1755 Query 149652 ATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTT 149711 || || | ||||| || ||||| || | | | || ||||||| |||| || Sbjct 1754 ATGAGGAGGTGCTGGGGACGCTCGGCGATCTGGCCGTGCATCTTGAGCAGGTAGGACTTC 1695 Query 149712 TCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCG 149771 || || |||||| |||| ||||| | | | || ||||||||| ||||| |||||| || Sbjct 1694 TCGAGGGTCTTGAAGCCGAAGTAGTCGAACTCGAAGTCGCGGTCGTGGAGGATGGCGCCG 1635 Query 149772 TCGATCAGCGCGCGGTTG 149789 |||| | |||||||| Sbjct 1634 TCGAGGACGTCGCGGTTG 1617 >seq24354 Length=8886 Score = 163 bits (180), Expect = 3e-35 Identities = 332/488 (68%), Gaps = 9/488 (2%) Strand=Plus/Minus Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || || ||||| |||||| ||| ||| | |||||| || |||||| | ||| ||| Sbjct 7238 GCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCATAGA 7179 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT-GCACGCGTCCTT 148948 ||||||| | ||| ||| | ||| | ||||||||||| | ||| ||| |||||||| Sbjct 7178 TTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCA-GCGTCCTT 7120 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTC 149008 || || | |||||| ||| || || | |||| || | |||| | || | Sbjct 7119 ATAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTATGGCCGCCCAGAGCTG 7060 Query 149009 CTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTC 149068 | |||| || | || ||| || || |||||| ||| || || ||| ||| Sbjct 7059 CCGCGCTCGTATCTGGCGCTTGTGCCGTCCCTCCGACTCATACTTCTCGTAGAGCTTCTC 7000 Query 149069 GAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCA 149128 ||| ||||||| ||| ||| |||| || || |||| ||| |||||||| || ||| Sbjct 6999 AAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACATCAGGCTCCA 6940 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 || |||||| | | ||||| ||||| || || ||||| ||||| | | |||| | || Sbjct 6939 AACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACCCGTAGAACAG 6880 Query 149189 GT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246 | | |||| ||| || || || ||| || |||||||||||| ||| Sbjct 6879 ATTCCTTGCGCGCTGC--TCCTCCTTTCCATGGTTTTTTCGGAGGTTGAGCACGTCGAAA 6822 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCC 149303 ||||| |||||||||||||| | ||| | |||| ||||| |||||| ||| ||| Sbjct 6821 ATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCCCGCCACCC 6762 Query 149304 TGGTCGAC 149311 || ||||| Sbjct 6761 TGATCGAC 6754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 230/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTT 148114 ||||||||| ||||||||| || | ||| |||||||| || ||||| | | ||||| Sbjct 8133 CTGGCTCTGATCAATGAACCGTCCCCTGTCCGCGGCCATGTCGATGAGGTCCCTCATCTT 8074 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 ||||||||| |||||||||||||| ||||| | ||||| |||| ||| ||| || Sbjct 8073 CATCTCCCAAACCGTCTTGTACAGCTCCTTGAGCCGGTCGGGGATGCAGTCTATG-TTTG 8015 Query 148175 C-ACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT---ATAGGTTGA 148230 | ||||| || || | | | ||| || |||| || | ||| | || | Sbjct 8014 CGACCGATCCTGAGTCCCTCATGAGCTGGTTCCGCA---CGCTCTTGTTCCAAAGACCCA 7958 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 || ||| ||| | ||||| | |||| || || ||||| || || || | Sbjct 7957 TGTCTGTCAAGTCCTGTATCAGGTGTGGATTAACTACGATGAACTCCCCTGCCTTGACAC 7898 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 | || | || | ||| ||| |||||| ||||| |||| || ||| | |||||| | Sbjct 7897 GGCGGACGTAAAGGTTCGTCGCAAACGGCTCAAAACACTCATTCACGCCGAGAATCTGTG 7838 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCG 148393 || | || || |||||| ||||| || |||||||| || Sbjct 7837 ATGTGGAGGCGGTTGGCATGGGAGCTACGAGGAGCGAGTTTCG 7795 >seq18597 Length=5183 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| || | ||| |||||||||| Sbjct 3099 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGC 3158 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| || ||||| || || || ||||| || |||||||| |||| Sbjct 3159 TGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGGATC 3218 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | |||||| | ||||| ||||| | ||||| || || ||| Sbjct 3219 TTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTCCCG 3278 Query 133635 GTCAGAGTTTTTACGAAAATCTGCA 133659 ||||| || || ||||||||||||| Sbjct 3279 GTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | ||| | | | |||||||| Sbjct 2871 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCA-TCCTCGAG 2929 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| || ||||| || || || |||||||| |||||||| ||| Sbjct 2930 CTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGAT 2989 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | |||||| | ||||| ||||| | ||||| || || || Sbjct 2990 CTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTCCC 3049 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || || |||||||| Sbjct 3050 GGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq9453 Length=4450 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||||||| | || || ||||| || || || |||||||| ||||| Sbjct 1051 GTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTT 992 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | |||||| || |||| ||||| Sbjct 991 GTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGAT 932 Query 133625 GGTTTTGCCGGTC 133637 ||||||||| ||| Sbjct 931 GGTTTTGCCTGTC 919 >seq20946 Length=4204 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || | | |||| || ||||| || || ||||||||||| |||| Sbjct 31 GTCCTCGAGCTGCTTCCCGGTGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTC 90 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | | | ||| || | || || ||||| | ||||| Sbjct 91 GTCCTGGATCTTCGCCTTGACGTTGTTGATCGTTTCCGACGGGTCGACGTCAAGGGTGAT 150 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | | ||||||||||| || || |||||||||||||| Sbjct 151 GATCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 186 >seq3706 Length=3511 Score = 86.0 bits (94), Expect = 6e-12 Identities = 117/165 (71%), Gaps = 9/165 (5%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGA---------T 133555 ||||||||||| ||| || | |||| || ||||| || || || |||| | Sbjct 3130 GTCCTCGAGCTACTTCCCGCCAAAAATCAGACGCTGTTGATCAGGGGGGATGCCCCATGT 3189 Query 133556 GCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 ||| ||||||| |||||| ||||| | |||| ||| || | ||||| ||||| Sbjct 3190 GCCCCCCTTGTCCTGGATCTTAGTCTTGACGTTGTCAATCGTATCCGACGGCTCGACGTC 3249 Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || |||||||| ||||| || || |||||||| Sbjct 3250 GAGGGTGATCGTCTTCCCGGTCAGGGTTTTAACAAAGATCTGCAT 3294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483113271858080