Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18597 95.1 8e-15 seq18371 86.0 4e-12 seq10981 86.0 4e-12 seq33104 82.4 5e-11 >seq18597 Length=5183 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || || ||| || || |||||||| || ||| Sbjct 2850 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2909 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || ||||| ||||||| |||||| ||||| | || Sbjct 2910 AGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 2969 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | || | ||| | ||||| | || || Sbjct 2970 ATGCCCTCCTTGTCCTGGATCTTC-GTCTTGACGTTGTCGATCGTGTCCGACGGCTCAAC 3028 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| |||||||| || || || | || || ||||||||||||||| Sbjct 3029 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCATA 3077 >seq18371 Length=23815 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| || || || || || ||||||||||| || | |||||| | Sbjct 23791 ACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCC 23732 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||||||||| || |||| | ||| ||||| |||| | || || || Sbjct 23731 ATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTT 23672 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| | || | ||| | |||||||||| || || || | ||||| Sbjct 23671 GTCCTGGATCTT-TGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGA 23613 Query 33713 TCGT 33716 |||| Sbjct 23612 TCGT 23609 >seq10981 Length=11828 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| || || || || || ||||||||||| || | |||||| | Sbjct 2391 ACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCC 2332 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||| |||||||| || |||| | ||| |||||| |||| | || || || Sbjct 2331 ATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTT 2272 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| | || | ||| | |||||||||| || || || | ||||| Sbjct 2271 GTCCTGGATCTT-TGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACATCGAGCGTGA 2213 Query 33713 TCGT 33716 |||| Sbjct 2212 TCGT 2209 >seq33104 Length=5523 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | ||| || |||| || || || ||| || || || || ||||| | Sbjct 3259 CACCACCTCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAG 3200 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| || | || |||| || ||||| ||||||||||| | ||| ||||| | | Sbjct 3199 AAAGTGTACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTG 3140 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || || || ||| | ||||| ||| | ||||| |||| || Sbjct 3139 GAATGCCTTCCTTATCCTGGATCTT-TGTCTTAACATTGTCAATTGTGTCACTTGGCTCG 3081 Query 33700 ACGTCAACCGTGATCGT 33716 || || | ||| ||||| Sbjct 3080 ACATCGAGCGTTATCGT 3064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328500122576640