Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq50892 574 1e-159 seq43102 574 1e-159 >seq50892 Length=141790 Score = 574 bits (636), Expect = 1e-159 Identities = 666/889 (75%), Gaps = 14/889 (2%) Strand=Plus/Minus Query 19595 TGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCC 19654 || ||||| || || || || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 86441 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 86382 Query 19655 GTATCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAG 19713 ||| | ||| | || || || || ||||||||||| || || || || | || || Sbjct 86381 GTAGCAGGTT-CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTC 86323 Query 19714 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCT 19773 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 86322 AAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTT 86263 Query 19774 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC--- 19830 |||||||| || || | |||| | | || || |||||| | | || | ||| Sbjct 86262 ATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAG 86206 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || || |||||| | ||||| || |||| ||| | |||||||| | || Sbjct 86205 TTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGT 86146 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCA 19950 || | ||||||||| || ||||| || ||||| || || | || ||||| | ||||| Sbjct 86145 AGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCA 86086 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGT 20010 ||| ||||| |||| ||||||||| |||||||| ||||| || |||| |||||| || Sbjct 86085 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGT 86026 Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 ||||||||| ||||| ||||| | |||||||| ||||||||| |||||| |||||||| Sbjct 86025 ATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGT 85966 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 20129 ||||||||| || |||||||||| ||||||||||| | || || || | | || | | Sbjct 85965 ATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTC-TAGTTTAATCC 85907 Query 20130 GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGA 20187 |||| || |||||| | ||| ||| ||||| |||||||| || || ||||||||||| Sbjct 85906 GTGAAACAACTGAAAACGAA--TCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGA 85849 Query 20188 GACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247 || || ||||||||||| || || ||||||||||| ||||| ||||||||||||||||| Sbjct 85848 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTC 85789 Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 |||||||| ||| || ||||||||||| | ||| ||||| || |||| || || Sbjct 85788 ATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTG 85729 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 ||| || | |||| || ||||||||| || || | |||||||||||||| ||||| Sbjct 85728 GTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCA 85669 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || || | || | |||||||| ||| | || |||||||| || | || ||||| Sbjct 85668 ATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGC 85609 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 | || | || | || || ||||| ||||| || || || ||||||||| Sbjct 85608 TGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCA 85560 Score = 574 bits (636), Expect = 1e-159 Identities = 666/889 (75%), Gaps = 14/889 (2%) Strand=Plus/Plus Query 19595 TGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCC 19654 || ||||| || || || || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 125648 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 125707 Query 19655 GTATCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAG 19713 ||| | ||| | || || || || ||||||||||| || || || || | || || Sbjct 125708 GTAGCAGGTT-CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTC 125766 Query 19714 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCT 19773 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 125767 AAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTT 125826 Query 19774 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC--- 19830 |||||||| || || | |||| | | || || |||||| | | || | ||| Sbjct 125827 ATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAG 125883 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || || |||||| | ||||| || |||| ||| | |||||||| | || Sbjct 125884 TTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGT 125943 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCA 19950 || | ||||||||| || ||||| || ||||| || || | || ||||| | ||||| Sbjct 125944 AGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCA 126003 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGT 20010 ||| ||||| |||| ||||||||| |||||||| ||||| || |||| |||||| || Sbjct 126004 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGT 126063 Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 ||||||||| ||||| ||||| | |||||||| ||||||||| |||||| |||||||| Sbjct 126064 ATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGT 126123 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT-GTGC 20129 ||||||||| || |||||||||| ||||||||||| | || || | || | || | | Sbjct 126124 ATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAAC-TTCTAGTTTAATCC 126182 Query 20130 GTGAGACTACTGAACAGGAAAGTCA--GAACTATGGTTACAAGTTTGGGCAAGAAGAAGA 20187 |||| || |||||| | ||| ||| ||||| |||||||| || || ||||||||||| Sbjct 126183 GTGAAACAACTGAAAACGAA--TCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGA 126240 Query 20188 GACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247 || || ||||||||||| || || ||||||||||| ||||| ||||||||||||||||| Sbjct 126241 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTC 126300 Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 |||||||| ||| || ||||||||||| | ||| ||||| || |||| || || Sbjct 126301 ATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTG 126360 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 ||| || | |||| || ||||||||| || || | |||||||||||||| ||||| Sbjct 126361 GTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCA 126420 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || || | || | |||||||| ||| | || |||||||| || | || ||||| Sbjct 126421 ATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGC 126480 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 | || | || | || || ||||| ||||| || || || ||||||||| Sbjct 126481 TGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCA 126529 >seq43102 Length=56976 Score = 574 bits (636), Expect = 1e-159 Identities = 666/889 (75%), Gaps = 14/889 (2%) Strand=Plus/Minus Query 19595 TGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCC 19654 || ||||| || || || || || ||||| ||||| || || ||||| ||||| ||||| Sbjct 27152 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 27093 Query 19655 GTATCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAG 19713 ||| | ||| | || || || || ||||||||||| || || || || | || || Sbjct 27092 GTAGCAGGTT-CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTC 27034 Query 19714 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCT 19773 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 27033 AAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTT 26974 Query 19774 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC--- 19830 |||||||| || || | |||| | | || || |||||| | | || | ||| Sbjct 26973 ATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAG 26917 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || || |||||| | ||||| || |||| ||| | |||||||| | || Sbjct 26916 TTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGT 26857 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCA 19950 || | ||||||||| || ||||| || ||||| || || | || ||||| | ||||| Sbjct 26856 AGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCA 26797 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGT 20010 ||| ||||| |||| ||||||||| |||||||| ||||| || |||| |||||| || Sbjct 26796 AGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGT 26737 Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 ||||||||| ||||| ||||| | |||||||| ||||||||| |||||| |||||||| Sbjct 26736 ATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGT 26677 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGC 20129 ||||||||| || |||||||||| ||||||||||| | || || || | | || | | Sbjct 26676 ATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTC-TAGTTTAATCC 26618 Query 20130 GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGA 20187 |||| || |||||| | ||| ||| ||||| |||||||| || || ||||||||||| Sbjct 26617 GTGAAACAACTGAAAACGAA--TCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGA 26560 Query 20188 GACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTC 20247 || || ||||||||||| || || ||||||||||| ||||| ||||||||||||||||| Sbjct 26559 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTC 26500 Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 |||||||| ||| || ||||||||||| | ||| ||||| || |||| || || Sbjct 26499 ATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTG 26440 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 ||| || | |||| || ||||||||| || || | |||||||||||||| ||||| Sbjct 26439 GTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCA 26380 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || || | || | |||||||| ||| | || |||||||| || | || ||||| Sbjct 26379 ATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGC 26320 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 | || | || | || || ||||| ||||| || || || ||||||||| Sbjct 26319 TGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCA 26271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148738856430936