Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq50892 542 8e-150 seq43102 542 8e-150 >seq50892 Length=141790 Score = 542 bits (600), Expect = 8e-150 Identities = 663/901 (74%), Gaps = 8/901 (1%) Strand=Plus/Minus Query 28723 TGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCT 28782 || ||||| || || || || || || || ||||| || || ||||| ||||| ||||| Sbjct 86441 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 86382 Query 28783 GTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC 28842 || || || | | | || || ||||||||||| || || || || | || || Sbjct 86381 GTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCA 86322 Query 28843 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC 28902 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 86321 AACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTA 86262 Query 28903 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC---T 28959 |||||||| || || | |||| | | || || |||||| | | || || ||| | Sbjct 86261 TACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAGT 86205 Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 |||||||| || || |||||| | ||||| || |||| ||| | || ||||| | || Sbjct 86204 TACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTA 86145 Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 |||| ||| ||||| || ||||| || ||||| || ||| | || |||||| |||||||| Sbjct 86144 GCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAA 86085 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTG 29139 |||||||| || | |||||||| ||||| || || || || |||| |||| | || Sbjct 86084 GGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTA 86025 Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 |||||||| ||||| ||||| | |||||||| ||||||||| || |||||||| || Sbjct 86024 TTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTA 85965 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCG 29258 |||||||| || |||| ||||| ||||||||||| | || || || | | || | || Sbjct 85964 TTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTC-TAGTTTAATCCG 85906 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 ||| || |||||| || || ||||| |||||||| || || ||||||||||| || Sbjct 85905 TGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAAC 85846 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 ||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| || Sbjct 85845 TTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATT 85786 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| || ||| || ||||||||||| | ||| ||||| || |||| || ||||| Sbjct 85785 CAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTT 85726 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 || | |||| || ||||||||| || || | |||||||| ||||| ||||| || Sbjct 85725 AACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATC 85666 Query 29499 GCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAA 29558 || | || | |||||||| ||||| || ||||||||| | | || || ||| | Sbjct 85665 TGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGA 85606 Query 29559 CCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 | || | ||||||||||| || ||||| || || ||||||||| | ||| | ||| | Sbjct 85605 TTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 85546 Query 29619 A 29619 | Sbjct 85545 A 85545 Score = 542 bits (600), Expect = 8e-150 Identities = 663/901 (74%), Gaps = 8/901 (1%) Strand=Plus/Plus Query 28723 TGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCT 28782 || ||||| || || || || || || || ||||| || || ||||| ||||| ||||| Sbjct 125648 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 125707 Query 28783 GTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC 28842 || || || | | | || || ||||||||||| || || || || | || || Sbjct 125708 GTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCA 125767 Query 28843 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC 28902 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 125768 AACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTA 125827 Query 28903 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC---T 28959 |||||||| || || | |||| | | || || |||||| | | || || ||| | Sbjct 125828 TACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAGT 125884 Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 |||||||| || || |||||| | ||||| || |||| ||| | || ||||| | || Sbjct 125885 TACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTA 125944 Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 |||| ||| ||||| || ||||| || ||||| || ||| | || |||||| |||||||| Sbjct 125945 GCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAA 126004 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTG 29139 |||||||| || | |||||||| ||||| || || || || |||| |||| | || Sbjct 126005 GGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTA 126064 Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 |||||||| ||||| ||||| | |||||||| ||||||||| || |||||||| || Sbjct 126065 TTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTA 126124 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTT-GTGCG 29258 |||||||| || |||| ||||| ||||||||||| | || || | || | || | || Sbjct 126125 TTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAAC-TTCTAGTTTAATCCG 126183 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 ||| || |||||| || || ||||| |||||||| || || ||||||||||| || Sbjct 126184 TGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAAC 126243 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 ||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| || Sbjct 126244 TTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATT 126303 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| || ||| || ||||||||||| | ||| ||||| || |||| || ||||| Sbjct 126304 CAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTT 126363 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 || | |||| || ||||||||| || || | |||||||| ||||| ||||| || Sbjct 126364 AACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATC 126423 Query 29499 GCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAA 29558 || | || | |||||||| ||||| || ||||||||| | | || || ||| | Sbjct 126424 TGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGA 126483 Query 29559 CCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 | || | ||||||||||| || ||||| || || ||||||||| | ||| | ||| | Sbjct 126484 TTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 126543 Query 29619 A 29619 | Sbjct 126544 A 126544 >seq43102 Length=56976 Score = 542 bits (600), Expect = 8e-150 Identities = 663/901 (74%), Gaps = 8/901 (1%) Strand=Plus/Minus Query 28723 TGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCT 28782 || ||||| || || || || || || || ||||| || || ||||| ||||| ||||| Sbjct 27152 TGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCA 27093 Query 28783 GTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC 28842 || || || | | | || || ||||||||||| || || || || | || || Sbjct 27092 GTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCA 27033 Query 28843 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC 28902 || || || || | |||||||||||||| |||||||| |||| ||||||| ||| | Sbjct 27032 AACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTA 26973 Query 28903 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC---T 28959 |||||||| || || | |||| | | || || |||||| | | || || ||| | Sbjct 26972 TACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT---TGCAAGT 26916 Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 |||||||| || || |||||| | ||||| || |||| ||| | || ||||| | || Sbjct 26915 TACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTA 26856 Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 |||| ||| ||||| || ||||| || ||||| || ||| | || |||||| |||||||| Sbjct 26855 GCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAA 26796 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTG 29139 |||||||| || | |||||||| ||||| || || || || |||| |||| | || Sbjct 26795 GGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTA 26736 Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 |||||||| ||||| ||||| | |||||||| ||||||||| || |||||||| || Sbjct 26735 TTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTA 26676 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCG 29258 |||||||| || |||| ||||| ||||||||||| | || || || | | || | || Sbjct 26675 TTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTC-TAGTTTAATCCG 26617 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 ||| || |||||| || || ||||| |||||||| || || ||||||||||| || Sbjct 26616 TGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAAC 26557 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 ||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| || Sbjct 26556 TTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATT 26497 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| || ||| || ||||||||||| | ||| ||||| || |||| || ||||| Sbjct 26496 CAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTT 26437 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 || | |||| || ||||||||| || || | |||||||| ||||| ||||| || Sbjct 26436 AACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATC 26377 Query 29499 GCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAA 29558 || | || | |||||||| ||||| || ||||||||| | | || || ||| | Sbjct 26376 TGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTGCTGA 26317 Query 29559 CCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 | || | ||||||||||| || ||||| || || ||||||||| | ||| | ||| | Sbjct 26316 TTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTC 26257 Query 29619 A 29619 | Sbjct 26256 A 26256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146576963744632