Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq50892 563 2e-156 seq43102 563 2e-156 >seq50892 Length=141790 Score = 563 bits (624), Expect = 2e-156 Identities = 719/984 (73%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || ||||| || |||||| | || ||||| |||||||| | ||| |||| Sbjct 86522 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 86463 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | | |||||||| ||||||||| || || || || || || ||||| ||||| Sbjct 86462 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 86403 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAACAACATCATAT 18910 || ||||| ||||| || || || ||||| |||| |||| || ||||||||||| | Sbjct 86402 ATCGATGGTATCCGTGAACCAGTAGCAGGT--TCTTTATTATACGGTAACAACATCATCT 86345 Query 18911 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 18970 | || || || | || || || || || || | |||||||||||||| ||||||| Sbjct 86344 CAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAG 86285 Query 18971 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 | |||| ||||||| ||| | |||||||| || || | |||| | | || || |||| Sbjct 86284 CAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACT 86225 Query 19031 TCCTCATTGGCGTCTATGC---TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 19087 || | | || || ||| ||||||||| || || |||||| | ||||| || ||| Sbjct 86224 TCTTATTAGGTGT---TGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAG 86168 Query 19088 GGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCT 19147 | ||||| |||||||| | || || | ||| ||||| || || ||||| ||||| || | Sbjct 86167 GTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTAT 86108 Query 19148 TCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTG 19207 || | || || ||| | ||||||||||| || || | ||||||||| ||||| || Sbjct 86107 TCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTG 86048 Query 19208 GTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCC 19267 |||| || |||| |||| | |||||||| |||||||| |||||| | |||||||| |||| Sbjct 86047 GTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCC 85988 Query 19268 ACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGC 19327 ||||| ||||| |||||||| ||||| || || |||| ||||| ||||||||||| Sbjct 85987 ACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCAT 85928 Query 19328 TTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTAC 19386 | || || || | | || | |||||||| |||||| | | ||| ||||| || ||| Sbjct 85927 TAGTAACTTC-TAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTAC 85869 Query 19387 AAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGG 19446 || || || ||||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 85868 AAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGT 85809 Query 19447 CTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCT 19506 | || ||||| ||||| || |||||||| ||| || |||| ||||| || ||| Sbjct 85808 TTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTA 85749 Query 19507 TGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTG 19566 ||||| || | || || ||||| | | | || | || || |||||||||||||| Sbjct 85748 TGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTA 85689 Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 || || || ||||| ||||| || || |||| | |||||||| ||| | || ||| Sbjct 85688 AACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGG 85629 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 ||||| || | || |||||| | | || | || ||||||||||||||||| || || Sbjct 85628 GCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCAC 85569 Query 19687 AACTTCCCACTTGATTTGGCTACA 19710 ||||||||| | ||||| ||| || Sbjct 85568 AACTTCCCATTAGATTTAGCTTCA 85545 Score = 563 bits (624), Expect = 2e-156 Identities = 719/984 (73%), Gaps = 12/984 (1%) Strand=Plus/Plus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || ||||| || |||||| | || ||||| |||||||| | ||| |||| Sbjct 125567 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 125626 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | | |||||||| ||||||||| || || || || || || ||||| ||||| Sbjct 125627 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 125686 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAACAACATCATAT 18910 || ||||| ||||| || || || ||||| |||| |||| || ||||||||||| | Sbjct 125687 ATCGATGGTATCCGTGAACCAGTAGCAGGT--TCTTTATTATACGGTAACAACATCATCT 125744 Query 18911 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 18970 | || || || | || || || || || || | |||||||||||||| ||||||| Sbjct 125745 CAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAG 125804 Query 18971 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 | |||| ||||||| ||| | |||||||| || || | |||| | | || || |||| Sbjct 125805 CAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACT 125864 Query 19031 TCCTCATTGGCGTCTATGC---TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 19087 || | | || || ||| ||||||||| || || |||||| | ||||| || ||| Sbjct 125865 TCTTATTAGGTGT---TGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAG 125921 Query 19088 GGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCT 19147 | ||||| |||||||| | || || | ||| ||||| || || ||||| ||||| || | Sbjct 125922 GTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTAT 125981 Query 19148 TCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTG 19207 || | || || ||| | ||||||||||| || || | ||||||||| ||||| || Sbjct 125982 TCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTG 126041 Query 19208 GTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCC 19267 |||| || |||| |||| | |||||||| |||||||| |||||| | |||||||| |||| Sbjct 126042 GTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCC 126101 Query 19268 ACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGC 19327 ||||| ||||| |||||||| ||||| || || |||| ||||| ||||||||||| Sbjct 126102 ACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCAT 126161 Query 19328 TTGTTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTAC 19386 | || || | || | || | |||||||| |||||| | | ||| ||||| || ||| Sbjct 126162 TAGTAAC-TTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTAC 126220 Query 19387 AAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGG 19446 || || || ||||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 126221 AAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGT 126280 Query 19447 CTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCT 19506 | || ||||| ||||| || |||||||| ||| || |||| ||||| || ||| Sbjct 126281 TTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTA 126340 Query 19507 TGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTG 19566 ||||| || | || || ||||| | | | || | || || |||||||||||||| Sbjct 126341 TGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTA 126400 Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 || || || ||||| ||||| || || |||| | |||||||| ||| | || ||| Sbjct 126401 AACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGG 126460 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 ||||| || | || |||||| | | || | || ||||||||||||||||| || || Sbjct 126461 GCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCAC 126520 Query 19687 AACTTCCCACTTGATTTGGCTACA 19710 ||||||||| | ||||| ||| || Sbjct 126521 AACTTCCCATTAGATTTAGCTTCA 126544 >seq43102 Length=56976 Score = 563 bits (624), Expect = 2e-156 Identities = 719/984 (73%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || ||||| || |||||| | || ||||| |||||||| | ||| |||| Sbjct 27233 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 27174 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | | |||||||| ||||||||| || || || || || || ||||| ||||| Sbjct 27173 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 27114 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAACAACATCATAT 18910 || ||||| ||||| || || || ||||| |||| |||| || ||||||||||| | Sbjct 27113 ATCGATGGTATCCGTGAACCAGTAGCAGGT--TCTTTATTATACGGTAACAACATCATCT 27056 Query 18911 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 18970 | || || || | || || || || || || | |||||||||||||| ||||||| Sbjct 27055 CAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAG 26996 Query 18971 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 | |||| ||||||| ||| | |||||||| || || | |||| | | || || |||| Sbjct 26995 CAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACT 26936 Query 19031 TCCTCATTGGCGTCTATGC---TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 19087 || | | || || ||| ||||||||| || || |||||| | ||||| || ||| Sbjct 26935 TCTTATTAGGTGT---TGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAG 26879 Query 19088 GGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCT 19147 | ||||| |||||||| | || || | ||| ||||| || || ||||| ||||| || | Sbjct 26878 GTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTAT 26819 Query 19148 TCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTG 19207 || | || || ||| | ||||||||||| || || | ||||||||| ||||| || Sbjct 26818 TCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTG 26759 Query 19208 GTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCC 19267 |||| || |||| |||| | |||||||| |||||||| |||||| | |||||||| |||| Sbjct 26758 GTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCC 26699 Query 19268 ACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGC 19327 ||||| ||||| |||||||| ||||| || || |||| ||||| ||||||||||| Sbjct 26698 ACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCAT 26639 Query 19328 TTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTAC 19386 | || || || | | || | |||||||| |||||| | | ||| ||||| || ||| Sbjct 26638 TAGTAACTTC-TAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTAC 26580 Query 19387 AAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGG 19446 || || || ||||||||||| ||||| ||||| || ||||| || || || |||||||| Sbjct 26579 AAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGT 26520 Query 19447 CTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCT 19506 | || ||||| ||||| || |||||||| ||| || |||| ||||| || ||| Sbjct 26519 TTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTA 26460 Query 19507 TGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTG 19566 ||||| || | || || ||||| | | | || | || || |||||||||||||| Sbjct 26459 TGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTA 26400 Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 || || || ||||| ||||| || || |||| | |||||||| ||| | || ||| Sbjct 26399 AACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGG 26340 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 ||||| || | || |||||| | | || | || ||||||||||||||||| || || Sbjct 26339 GCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCAC 26280 Query 19687 AACTTCCCACTTGATTTGGCTACA 19710 ||||||||| | ||||| ||| || Sbjct 26279 AACTTCCCATTAGATTTAGCTTCA 26256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141063497781336