Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24354 120 3e-22 >seq24354 Length=8886 Score = 120 bits (132), Expect = 3e-22 Identities = 326/492 (66%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 147469 GCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGG 147528 || || ||||| |||||| ||| || ||| ||||||| | ||| || | ||| || Sbjct 7238 GCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCATAGA 7179 Query 147529 TTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT-GCACGCGTCTTT 147587 ||||||| | ||| || | |||||||||||||| |||| || ||| ||||| || Sbjct 7178 TTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCA-GCGTCCTT 7120 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTC 147647 | || | |||||| ||| ||||| | ||||| || | || | || | Sbjct 7119 ATAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTATGGCCGCCCAGAGCTG 7060 Query 147648 CTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTC 147707 | ||||||| | | | || | || ||||| || ||| |||||| | | ||| Sbjct 7059 CCGCGCTCGTATCTGGCGCTTGTGCCGTCCCTCCGACTCATACTTCTCGTAGAGCTTCTC 7000 Query 147708 AAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 ||||| ||||||| ||| ||| | ||||| ||||||| || || |||||||| ||| Sbjct 6999 AAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACATCAGGCTCCA 6940 Query 147768 CATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | ||||| | | |||||| ||| || || || || ||||| | | |||| | || Sbjct 6939 AACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACCCGTAGAACAG 6880 Query 147828 ATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA--TTAAGCACGCTAT 147883 || | |||| ||| ||||| || ||| |||| | || |||||| Sbjct 6879 ATTCCTTGCGCGCTGC--TCCTCCTTTCCATGGTTT--TTTCGGAGGTTGAGCACGTCGA 6824 Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG---C 147940 | |||||||||||||| || || | ||| | ||| | || || ||||| ||| | Sbjct 6823 AAATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCCCGCCAC 6764 Query 147941 CCTGGTCGACAT 147952 |||| ||||||| Sbjct 6763 CCTGATCGACAT 6752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476308003785120