Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4331 237 2e-57 >seq4331 Length=8668 Score = 237 bits (262), Expect = 2e-57 Identities = 368/520 (71%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 ||||| ||||| || | ||||||||||| ||||||||||| | |||||| |||||| Sbjct 6752 ACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCGGGG 6811 Query 147166 TTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATA-AC 147224 ||||| ||||| | || | || | ||| ||||| || | |||| ||||| | Sbjct 6812 TTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATGCAG 6871 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGG 147283 | | |||||||||||| |||| ||| |||| | | | |||| |||| ||||| | Sbjct 6872 TCGGC-CAGCTGGTCCACCCCCTTCCCCTTGTAG-TCGGCGCGCATGTCCTCGTACTCCG 6929 Query 147284 CCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCG 147343 |||| ||||||||||||||||| |||||||| ||||| |||||||| || | ||||| Sbjct 6930 CCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGCG 6989 Query 147344 AGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCT 147403 | | |||| | | ||| |||||| | || |||| ||||||| ||| | || Sbjct 6990 ACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTCT 7049 Query 147404 TGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAA 147463 || ||| |||||| || | || |||||||||| || ||||||||| |||||||| | Sbjct 7050 TGTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCGGCCA 7109 Query 147464 CCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAAT 147520 | |||||||| || | ||| || || || ||||||| | ||| | || || | Sbjct 7110 CGCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGGGAGCGCGCCGTCGCGAAGGGAGT 7169 Query 147521 ACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCG 147580 | | | ||| |||| ||| ||| |||||| || |||||||||||| |||| | Sbjct 7170 AGCGCATCTGCACCCCGAACTTGGACTTCGTGCCGGTCCCCGTCCTGTCCCCCCTCTGGA 7229 Query 147581 TCCCGTTCTCCAAAATCTCCCTGACGGTGTTGAGGTACTG 147620 |||||||| | || || | | | ||| ||||||||| Sbjct 7230 CGCCGTTCTCGATGATATCGCGGCAGATGTCGAGGTACTG 7269 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||||| ||| ||||||| | || || || | ||||||| |||| | ||||| Sbjct 6311 ATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCCACA 6370 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| ||||| || || ||||| || | ||||| |||||||| |||||||| | ||| Sbjct 6371 TGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGCCCG 6430 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || || | ||||||||||| || || || | ||| ||||||||||| || || || Sbjct 6431 GTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACGCCG 6490 Query 147052 AGGCCCATGTC 147062 || |||||||| Sbjct 6491 AGCCCCATGTC 6501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583116814108800