Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq18597 98.7 9e-16 seq18371 89.7 5e-13 seq10981 89.7 5e-13 seq33104 84.2 2e-11 >seq18597 Length=5183 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| | | | |||||| || | || |||||| || |||||||| || Sbjct 2847 TTTCCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 2906 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | ||| || | || || |||||||| || || || |||| ||||| || || | Sbjct 2907 GAGAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGG 2966 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTC 35685 || | || |||||||||| |||||| ||| | |||| | | |||||| || || Sbjct 2967 GGGATGCCCTCCTTGTCCTGGATCTTCGTCTTGA-CGTTGTCGATCGTGTCCGACGGCTC 3025 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||||| || || |||| || || ||||| |||||||| Sbjct 3026 AACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq18371 Length=23815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| ||||| | | ||| |||||||| | ||| ||||| |||||||||||||| | Sbjct 23803 TCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGA 23744 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||||| || | || || || || || || || || |||| | ||| || |||| || Sbjct 23743 TAAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGG 23684 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 | | |||||||||| ||||||| ||| | |||| | | |||||||| | || | Sbjct 23683 GATCCCCTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCAATTGTGTCGCTTGGCTCGA 23625 Query 35688 CCTCCACCGTGATCGT 35703 | || | ||||||||| Sbjct 23624 CATCGAGCGTGATCGT 23609 >seq10981 Length=11828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| ||||| | | ||| |||||||| | ||| ||||| |||||||||||||| | Sbjct 2403 TCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGA 2344 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||||| || | || || || ||||| || || || |||| | ||| || || | || Sbjct 2343 TAAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGG 2284 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 | | |||||||||| ||||||| ||| | |||| | | |||||||| | || | Sbjct 2283 GATCCCCTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCAATTGTGTCGCTTGGCTCGA 2225 Query 35688 CCTCCACCGTGATCGT 35703 | || | ||||||||| Sbjct 2224 CATCGAGCGTGATCGT 2209 >seq33104 Length=5523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| |||| || | ||| |||||| || || || ||||| | Sbjct 3257 CCACCTCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGAA 3198 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| |||||||| ||||||| ||| || |||| ||| Sbjct 3197 AGTGTACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGGA 3138 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| ||||||| ||| | | | | | ||||| || | || || Sbjct 3137 ATGCCTTCCTTATCCTGGATCTTTGTCTTAACATTGTCAATTGTGTCACTTGGCTCGACA 3078 Query 35690 TCCACCGTGATCGT 35703 || | ||| ||||| Sbjct 3077 TCGAGCGTTATCGT 3064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450506827651360