Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18597 113 5e-20 seq9453 105 7e-18 >seq18597 Length=5183 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | ||| || | ||| | ||| || || || ||||| || ||||||||||| Sbjct 2847 TTTCCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 2906 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || |||||||| || || || ||||||| |||||| ||||| || Sbjct 2907 GAGAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGG 2966 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || ||||| ||| | ||||| |||| || Sbjct 2967 GGGATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCA 3026 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| | || ||||| || || ||||| Sbjct 3027 ACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || || || ||||| || ||||||||||| Sbjct 3078 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 3137 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || ||||||| |||||| ||||| || || Sbjct 3138 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 3197 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| |||| || ||| Sbjct 3198 ATACCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACG 3257 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 || || || || || || ||||| | || || |||||||| |||| Sbjct 3258 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| ||||| || ||||| || ||||||||||| Sbjct 1122 CCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 1063 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || |||| |||||| ||||| || || Sbjct 1062 AGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGG 1003 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || | || || Sbjct 1002 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACA 943 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || |||||||| || || Sbjct 942 TCGAGGGTGATGGTTTTGCCTGT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505076890807840