Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq45459 107 2e-18 >seq45459 Length=4245 Score = 107 bits (118), Expect = 2e-18 Identities = 368/561 (66%), Gaps = 17/561 (3%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 ||||||||||||||||| || ||| |||| ||||| ||||| || || || ||||| || Sbjct 2717 ATATGGCAAATGTACAAGAAGGCAGAGGCATCATTCTGGACGGCCGAGGAGATTGATCTG 2776 Query 43790 ACTAAAGACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTT 43847 | | |||||| | || | ||| || | | | || | |||| |||||| | || Sbjct 2777 GCCGAGGACTTAAAGGAC-TGGGACGGCTTGACGAACA-ACGAAAGGCATTTTGTCTCCC 2834 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907 | | || || || |||||| ||||| |||||||| || || | | | | Sbjct 2835 ACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAACT 2894 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 | || || ||||||| | || || | ||||| || || |||||||||||| | | Sbjct 2895 TCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGTTG 2954 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG-GGC-- 44024 |||| ||||| || | || | ||||| || || ||||| || || ||| Sbjct 2955 AAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAGGCCG 3014 Query 44025 ACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCA 44083 || ||| ||| | | | || || || || || || || |||| | | | | || || Sbjct 3015 ACAAGATGCACC---TCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAA-AAGGCG 3070 Query 44084 GACTGGGCCCTTAAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCG 44140 | ||||||||||| ||| | || | ||| ||||| | || || |||| Sbjct 3071 AATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCTCTTTCGCGGAGCGGTGCATCGCC 3130 Query 44141 TTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAA 44199 || || | || || ||||||||||| ||||| || ||| ||||| || ||| | || Sbjct 3131 TTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGC-GCCATCTTCTGGCTCAA 3189 Query 44200 GAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 ||| ||||| | |||||||| | || ||||| ||| | || || || ||||| Sbjct 3190 GAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGG 3249 Query 44260 CTTACATTGCGATTTTGCTTG 44280 | || ||||| ||||| || Sbjct 3250 ACTGCACTGCGACTTTGCCTG 3270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397209479406460