Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18597 100 2e-16 seq9453 86.0 5e-12 >seq18597 Length=5183 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | | |||| | || ||| Sbjct 2868 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 2927 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| |||| |||||||||||||| || || | ||||| || || | Sbjct 2928 AGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGG 2987 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | | || | ||||| | | ||||| || || || || | || Sbjct 2988 ATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTC 3047 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || |||||||| |||||| Sbjct 3048 CCGGTCAGGGTCTTAACAAAGATCTGCATA 3077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | | |||| |||| ||| Sbjct 3096 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 3155 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| |||| |||||||||||||| || || | |||||| || || | Sbjct 3156 AGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGG 3215 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | | || | ||||| | | || || || || || || | || Sbjct 3216 ATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTC 3275 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCA 27246 || ||||| || || || || || |||| Sbjct 3276 CCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | ||| | || | || | ||| || || || || || |||||||| Sbjct 1123 GCCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 1064 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || |||| |||||||| || || ||| | || ||||||||||||||||| || Sbjct 1063 GAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGG 1004 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| | || | | | || | ||||| | || || || Sbjct 1003 GATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGAC 944 Query 27200 TTCTAGAGTTATAGATTTGCCCGTC 27224 || || || || | |||||| ||| Sbjct 943 ATCGAGGGTGATGGTTTTGCCTGTC 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424670836031904