Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq45459 134 2e-26 seq4998 134 2e-26 seq2764 116 5e-21 seq50892 96.9 4e-15 seq43102 96.9 4e-15 seq48315 91.5 2e-13 >seq45459 Length=4245 Score = 134 bits (148), Expect = 2e-26 Identities = 409/622 (66%), Gaps = 24/622 (4%) Strand=Plus/Minus Query 122482 AGGAGACGATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 |||||||| || | |||| | ||||||||||| | |||| | |||||||| ||||| Sbjct 3444 AGGAGACGGTCGG-CACAGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCGAT 3386 Query 122541 GAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 122600 || | | || |||||||| | || ||| | ||||| ||||| || || | | || Sbjct 3385 AAGTTCAACAGGAAGTGCGTCGACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTAC 3326 Query 122601 GATGGCGTGGATAGT---TTCGG-----TAGTGGGTCTATTACGCAAAGTCTTGAAGAGC 122652 || || ||| | ||||| | || | || || ||| | ||| Sbjct 3325 AATCTCGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCG---AGTAAAGGAGA-- 3271 Query 122653 TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 122712 || |||||| || ||| || || || || ||||||||||| || |||||||| || Sbjct 3270 --CA-GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAG 3214 Query 122713 AGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 122772 ||||| |||||||| || |||||||| | ||| | || |||||||| || ||| |||| Sbjct 3213 AGACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAG 3154 Query 122773 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCA 122832 || || ||||| || || || || | || || ||||| ||| | | Sbjct 3153 AAAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAG 3094 Query 122833 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 122892 || |||| || | ||||| |||||||| |||| || || || || || | |||||| Sbjct 3093 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 3034 Query 122893 TCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 122952 | | | ||| |||| || | |||||||||||| |||| |||| ||||| Sbjct 3033 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 2974 Query 122953 GTTTCGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTC-G 123009 || || | |||| ||||| | |||| |||| || ||||||| | | || || | Sbjct 2973 GTCTCACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 2916 Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069 | || |||||||| || || || | | ||||| || || || || ||| Sbjct 2915 CGGAT-TGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGAC 2857 Query 123070 CCAGCAAAGAATGCCAGGATGT 123091 |||| ||||| || ||||||| Sbjct 2856 GCAGCGAAGAAGGCGAGGATGT 2835 >seq4998 Length=959 Score = 134 bits (148), Expect = 2e-26 Identities = 409/622 (66%), Gaps = 24/622 (4%) Strand=Plus/Plus Query 122482 AGGAGACGATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 |||||||| || | |||| | ||||||||||| | |||| | |||||||| ||||| Sbjct 281 AGGAGACGGTCGG-CACAGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCGAT 339 Query 122541 GAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 122600 || | | || |||||||| | || ||| | ||||| ||||| || || | | || Sbjct 340 AAGTTCAACAGGAAGTGCGTCGACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTAC 399 Query 122601 GATGGCGTGGATAGT---TTCGG-----TAGTGGGTCTATTACGCAAAGTCTTGAAGAGC 122652 || || ||| | ||||| | || | || || ||| | ||| Sbjct 400 AATCTCGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCG---AGTAAAGGAGA-- 454 Query 122653 TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 122712 || |||||| || ||| || || || || ||||||||||| || |||||||| || Sbjct 455 --CA-GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAG 511 Query 122713 AGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 122772 ||||| |||||||| || |||||||| | ||| | || |||||||| || ||| |||| Sbjct 512 AGACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAG 571 Query 122773 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCA 122832 || || ||||| || || || || | || || ||||| ||| | | Sbjct 572 AAAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAG 631 Query 122833 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 122892 || |||| || | ||||| |||||||| |||| || || || || || | |||||| Sbjct 632 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 691 Query 122893 TCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 122952 | | | ||| |||| || | |||||||||||| |||| |||| ||||| Sbjct 692 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 751 Query 122953 GTTTCGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTC-G 123009 || || | |||| ||||| | |||| |||| || ||||||| | | || || | Sbjct 752 GTCTCACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 809 Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069 | || |||||||| || || || | | ||||| || || || || ||| Sbjct 810 CGGAT-TGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGAC 868 Query 123070 CCAGCAAAGAATGCCAGGATGT 123091 |||| ||||| || ||||||| Sbjct 869 GCAGCGAAGAAGGCGAGGATGT 890 >seq2764 Length=7933 Score = 116 bits (128), Expect = 5e-21 Identities = 303/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || |||| |||||||||||| || ||||| || |||||||| || | ||||| Sbjct 3709 ATATTCGCCCACCCTCTTCTCAAAGAAATTTGTCTTGCCTTCAAGGCTGATCATGTCCAT 3768 Query 122430 AAAGTCAAATGGATTCTTCGCGT-TCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGA 122487 | || || |||||||| || | | ||| || | | ||||||| | | | ||| | | Sbjct 3769 CCAATCGAACGGATTCTT-GCTTCTGTAAAGCGGCTCGTACCCCAAGTCGGT-GAGCATA 3826 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 ||||||| |||| |||| || || | | ||| | || ||||| ||||| | | | Sbjct 3827 CGATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAGCTG 3886 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 || || || || ||||||| | || || | || || || ||| | | ||| Sbjct 3887 ACGGGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTATGCGA 3946 Query 122608 TGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA--GCTC-CACGGCAAAC 122664 | |||| || || | | || | || | ||| | ||| |||| |||| Sbjct 3947 TTGATATGCTCCTGCGTCAGCTTGTTTTTGA--GTTTGGAATACAGCTGACACG-CAAAT 4003 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| | ||||| ||||| || || ||||| |||||| || || |||||| Sbjct 4004 GAGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCATG 4063 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 |||||||||||||||| ||| | || || ||||| ||||| |||||||| || ||||| Sbjct 4064 AGACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCTCA 4123 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||| || || || | || | |||||||| Sbjct 4124 ACAGTAGCGAAGGCGATTAGCCTCTCGGCGAA 4155 >seq50892 Length=141790 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/292 (68%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||| || || || || | | || |||| | || || || ||||| | Sbjct 2226 CTTGACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTG 2167 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTC---AAAGCCATCCATCTCGGTGAGTA 11561 | || ||| ||| ||| || | ||| || ||| |||||||| || || | || Sbjct 2166 TAGCACCAACAAC---AATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATA 2110 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCT 11621 |||||| | |||||| || | ||||| ||| | | ||||||||| |||| Sbjct 2109 GTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTC 2050 Query 11622 TGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 11681 | || || |||||||| |||||||| || |||||||| || |||||| || ||| Sbjct 2049 TACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTT 1990 Query 11682 CAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || | ||| ||||| | ||||| | || | ||||||||||||||| Sbjct 1989 GGAATAAATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/292 (68%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||| || || || || | | || |||| | || || || ||||| | Sbjct 8783 CTTGACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTG 8842 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTC---AAAGCCATCCATCTCGGTGAGTA 11561 | || ||| ||| ||| || | ||| || ||| |||||||| || || | || Sbjct 8843 TAGCACCAACAAC---AATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATA 8899 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCT 11621 |||||| | |||||| || | ||||| ||| | | ||||||||| |||| Sbjct 8900 GTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTC 8959 Query 11622 TGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 11681 | || || |||||||| |||||||| || |||||||| || |||||| || ||| Sbjct 8960 TACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTT 9019 Query 11682 CAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || | ||| ||||| | ||||| | || | ||||||||||||||| Sbjct 9020 GGAATAAATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 9071 >seq48315 Length=10477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 111228 TTGGA-AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 ||||| |||| ||| || |||| |||||||| || |||| || |||||||| Sbjct 2698 TTGGAGAGGGAGATGGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCG 2639 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | ||| || || || | |||||| | ||| ||||| || | |||| ||||| ||| Sbjct 2638 ACAATCTCGGTGCAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 2579 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||| ||||||||||||||||||||||| || ||||| ||| || | ||| Sbjct 2578 CCGTTGCAGTGGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTGGGAGTCGAGG 2519 Query 111407 ATAGC 111411 || || Sbjct 2518 ATGGC 2514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627632477443200