Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq48315 138 1e-27 seq2764 132 6e-26 seq45459 113 6e-20 seq4998 113 6e-20 seq34148 105 8e-18 seq50892 100 4e-16 seq43102 100 4e-16 seq2068 98.7 1e-15 seq24680 82.4 9e-11 seq2697 82.4 9e-11 >seq48315 Length=10477 Score = 138 bits (152), Expect = 1e-27 Identities = 300/442 (68%), Gaps = 19/442 (4%) Strand=Plus/Minus Query 119034 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 119093 |||| || |||||| ||||| |||||||||||||| |||| || |||| || | Sbjct 2264 ACCCTCTCCATGAACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTC--GC---CC 2210 Query 119094 TCTTCATC-----CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 ||| |||| ||| || || | | || | ||| | | ||| |||||||||| Sbjct 2209 TCTCCATCTCGTTCCCGTGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCC 2150 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACC 119205 |||| || | |||| ||||||| || ||||| | | || |||||| || |||| Sbjct 2149 ACGGCTCGATGTACGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACC 2090 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 ||| ||| ||| || || || ||||| || | ||| || | ||| ||| || || | Sbjct 2089 GCGCCGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGC 2030 Query 119266 CCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 119323 |||| || |||| | | || | ||| | |||| || || || ||||| || Sbjct 2029 CCCGGATGTACGACGCGGAC--GCGCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGC 1972 Query 119324 CCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA-C 119382 |||| ||| |||||| | | |||| || |||| || || ||||| ||||| | Sbjct 1971 GTACTTGCTGATGACCGCGCAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTC 1912 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 ||| | || | ||||||||||||||||| || || |||| || || |||||||| | Sbjct 1911 CCTGACGCACG-TCAGGAAGCAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACA 1853 Query 119443 GAGTTGGTGTCGCGTGGATGAA 119464 | || || || |||||| |||| Sbjct 1852 GCGTGGGCGTGGCGTGGGTGAA 1831 >seq2764 Length=7933 Score = 132 bits (146), Expect = 6e-26 Identities = 394/596 (66%), Gaps = 19/596 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || |||| |||||| ||||| |||||||| || || | |||||| | ||||| Sbjct 3709 ATATTCGCCCACCCTCTTCTCAAAGAAATTTGTCTTGCCTTCAAGGCTGATCATGTCCAT 3768 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-CTGGCACTCCAA-TCTGTTTGAGGAGA 129844 |||| || || ||||| | ||| | || | || |||| || || ||| | | Sbjct 3769 CCAATCGAACGGATTCTTGCTTCTGTAAAGCGGCTCGTACCCCAAGTCGGT--GAGCATA 3826 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||||| || |||| || || | ||| | || ||||| ||||| | | | Sbjct 3827 CGATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAGCTG 3886 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG-GC 129963 || ||||| || ||||||| | ||| || | || || ||||| | | ||| | Sbjct 3887 ACGGGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTATGCGA 3946 Query 129964 GTGA-ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 130019 ||| ||| || | | | ||| | || | ||| | ||| | | |||| ||| Sbjct 3947 TTGATATGCTC-CTGCGTCAGCTTGTTTTTG---AGTTTGGAATACAGCTGACACG-CAA 4001 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| | |||||||| || ||| || |||||||||||| || || |||| Sbjct 4002 ATGAGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCA 4061 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||||||||||||||||| |||||| || ||||| || || || |||||||| ||||||| Sbjct 4062 TGAGACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCT 4121 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCAC 130198 | ||| ||||| || | || | ||| || |||| ||| || | | | || Sbjct 4122 CAACAGTAGCGAAGGCGATTAGCCTCTCGGCGAAAGTCGCG----TTGCTCCCGATATAC 4177 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 ||| |||||| |||||| |||||| || || |||||| | ||| ||| || Sbjct 4178 TTCTGCGCCCATATCGCCTTCCTCTCGACACTTGGCACGGTCGAGTGCGCCGAAAACAGG 4237 Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314 ||| | | || || || | ||||||| ||| || || |||||| || || Sbjct 4238 ACCTCCCTCTCCTTCGGGTCGTCGATGTACGAATCGATCAGAAGTGAATACGTCTC 4293 >seq45459 Length=4245 Score = 113 bits (124), Expect = 6e-20 Identities = 191/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || ||||| ||||| || || || || ||||| || ||||| Sbjct 3268 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 3209 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || || || || || || |||||| || Sbjct 3208 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 3149 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAA 130193 ||||| || ||||| || | | ||||| || || ||| | | | | || Sbjct 3148 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGC-GAGTCGC 3090 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||||||| | ||||| | ||||||||||| | ||||| ||||||| ||| || | | Sbjct 3089 ACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTGA 3030 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||| | | |||| || | | || || ||||| Sbjct 3029 GGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTA 2996 >seq4998 Length=959 Score = 113 bits (124), Expect = 6e-20 Identities = 191/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || ||||| ||||| || || || || ||||| || ||||| Sbjct 457 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 516 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || || || || || || |||||| || Sbjct 517 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 576 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAA 130193 ||||| || ||||| || | | ||||| || || ||| | | | | || Sbjct 577 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGC-GAGTCGC 635 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||||||| | ||||| | ||||||||||| | ||||| ||||||| ||| || | | Sbjct 636 ACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTGA 695 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||| | | |||| || | | || || ||||| Sbjct 696 GGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTA 729 >seq34148 Length=11268 Score = 105 bits (116), Expect = 8e-18 Identities = 251/375 (67%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||||||| || || || || || ||||| || ||||| | ||| ||||| |||| | Sbjct 2068 ACGGTGATCTTGCGGTCGAATCGGCCGGGGCGTAGAAGGGCCTGGTCGAGGATGTCAACG 2127 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| || || |||||| | ||| || | | | || || || ||||||||| Sbjct 2128 CGGTTGGTAGCGGCGATGGTGATGATTCCGGGGTTGCCGTCGAAACCGTCCATCTCAACA 2187 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCACCCGCACTGC 14228 | || || || ||||| || || || || || || ||| ||| | || |||| | Sbjct 2188 AGGATCTGGTTAATGGTCTGCTCACGCTCGTCGTTACCGCCGGCGAA--TCCGGCACCAC 2245 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGG 14288 | || || || ||||| || ||||||||||||| ||| || || || | || Sbjct 2246 GCTGGCGTCCTACAGCGTCGATCTCATCGATGAAAATGATGCAGGGGGCGTTCTTCTTGG 2305 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | ||| || || || || | | || || ||||| || |||||||| || || | Sbjct 2306 CCTGGGAAAATATGTCACGGACACGGCTAGCTCCAACACCAACGAACATCTCGACGAACT 2365 Query 14349 TGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 || | | | |||| ||||| ||||| | || || || | ||| ||||||| Sbjct 2366 CGGAACCAG-AGATTGAAATGAAAGGGACTCCTGCCTCGCCAGCAACGGCCTTGGCGAGG 2424 Query 14408 AGGGTCTTCCCCGTC 14422 |||||||| || ||| Sbjct 2425 AGGGTCTTACCTGTC 2439 >seq50892 Length=141790 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || || || |||||||| | ||||| || |||||||| || || Sbjct 2132 AAAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACC 2073 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | |||| |||| |||| |||| ||||| ||||||||||| || ||||| ||||| Sbjct 2072 ACCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACA 2013 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || |||||| || || || | |||||| |||| ||||| | || | Sbjct 2012 AGGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGAT 1953 Query 14332 AAACATCTCCACAAA 14346 ||||||||||||||| Sbjct 1952 AAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || || || |||||||| | ||||| || |||||||| || || Sbjct 8877 AAAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACC 8936 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | |||| |||| |||| |||| ||||| ||||||||||| || ||||| ||||| Sbjct 8937 ACCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACA 8996 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || |||||| || || || | |||||| |||| ||||| | || | Sbjct 8997 AGGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGAT 9056 Query 14332 AAACATCTCCACAAA 14346 ||||||||||||||| Sbjct 9057 AAACATCTCCACAAA 9071 >seq2068 Length=11277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 283/427 (66%), Gaps = 15/427 (4%) Strand=Plus/Plus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAA-GCGTTGGCATATAGAA 178943 ||||||||||| || | | ||| ||||| |||| | ||||| | |||| | |||| Sbjct 4665 CCCGTGCCGATACCCTGCGCTCCATTCACAAGAAGAAGTGGAATGACAGGGCAAA-AGAA 4723 Query 178944 GTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTC--CCTC 179001 || |||||||||| | |||||||| ||| || | ||||| | |||||| | || Sbjct 4724 TTCGGGTTCAATCGATAGGCCGTCATCTTCCCTGTAGTCGAGCAACGCGTCGTCAACTTC 4783 Query 179002 GGATCAAAGATTTTACGAGCATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 179061 || ||| | | ||| | || | | ||||||||||| || | | Sbjct 4784 GGGG-AAACAGAAGCCTAGCTACTGGGGACAAATGAGTGAAGATGTATCTGGGGGATGCG 4842 Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 || || | || |||||||| || || ||||| || ||| ||| || || |||||| Sbjct 4843 GCGTCATCCCCGCCCATGAGGCGAGTTCCAAACTGGCCAATAGGCAGTAGCAGGTTGATA 4902 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCA-ACTTGACAATCGTATCCGCGAGGGAGACT-- 179178 |||||||| |||| | ||| | |||| ||||| || || | | | ||||| Sbjct 4903 TTGTTTGATCCCACGAAGTTCTGCGCCATACTTG-TGATTGTTGC----ATGAAGACTGG 4957 Query 179179 --TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCA 179236 || ||||| || || || | | ||||| || | || || ||||| ||||| | Sbjct 4958 CCTCTCCGTGGTGATAGGCAGTGTGCTCCGCGCAGTAGCCAGCTAATTGCGCAACCTTGA 5017 Query 179237 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGA 179296 |||| ||||| || || | |||||| |||| || | ||||||||| || ||||| | Sbjct 5018 TCTCGTCCTTCAGATTGCGCTTGAAGCAGGCATGCAAAATCTTTCTTTGCGATGGCTTTA 5077 Query 179297 GGCCGTC 179303 | ||||| Sbjct 5078 GTCCGTC 5084 >seq24680 Length=7660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 207/306 (68%), Gaps = 9/306 (3%) Strand=Plus/Minus Query 14041 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 14100 ||| ||| ||||||||||| || || || ||||| || | ||||| | ||| || Sbjct 1076 GGGCAGGTCCACGGTGATCTGCCGGTCGAACCGACCCGGCCTCGTCAGGGCCTTGTCGAG 1017 Query 14101 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCAAAGCCAT 14159 ||| || | |||||| ||| |||| | ||| || | ||||||| || | ||||| | Sbjct 1016 GATGTCGACGCGGTTGGTCCCCGCCAGGACGACCACGCCCGTCGACGACGT-GAAGCCGT 958 Query 14160 CCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG--GCAT 14214 ||||||| | | || | || || | || | || || || || || ||| | | || Sbjct 957 CCATCTC-GACGAGCATCTGGTTCAGCGTGTTCTCCCGCTCGTCGTTGCCGCCGCCGAAT 899 Query 14215 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG 14274 || |||| | ||| ||| | ||||||||||| || || |||||||| || || || || Sbjct 898 CCCCCCCG-TCCGCGCTGCCTCCCGACGGCGTCGATCTCGTCGATGAAGACTATGCAGGG 840 Query 14275 TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334 || | ||||| | | |||| || ||||||| | | ||||| || || || Sbjct 839 GGCGTTGGCGCGGGCCTCCTTGAAGAGGTCGCGCACTCGCGACGGTCCGACGCCGACGAA 780 Query 14335 CATCTC 14340 ||| || Sbjct 779 CATTTC 774 >seq2697 Length=14000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 179068 TTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTT 179127 ||||| ||||| |||| || ||||||||||| | || | ||| || ||||| ||||| Sbjct 10469 TTGCCTCCCATTCGACGGGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTTC 10528 Query 179128 GAACCCATGTAGTCATTGGCCAACTTGACAAT---CGTATCCGCGAGGGAGACTTCACCG 179184 || || |||| ||||| | | || |||| ||| | | || | ||| ||| Sbjct 10529 GATCCGCAGTAG-GATTGGGC--CATGCCAATGACCGTGCCATTCAATGACATTTCCCCG 10585 Query 179185 TGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATCC 179244 || || || ||||| | ||| | | ||| | || | ||| || ||||| ||||| | Sbjct 10586 TGGTGATACGCCGAATGTTCCCCAATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 10645 Query 179245 TTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCG 179304 || | ||||| | ||| |||||| ||| ||||| | || || || ||||| || || Sbjct 10646 TTCAATTTCTTCTTGAAACACGCAAACAAGACCTTGCGCTGAGAGGGTTTGAGCCCATCC 10705 Query 179305 GCCATGTGCGCGATGGAACG 179324 ||||| | ||| || || Sbjct 10706 ATAATGTGTGGGATCGATCG 10725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618041782447520