Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq45459 150 2e-31 seq4998 150 2e-31 seq2764 111 2e-19 seq2697 104 3e-17 seq50892 100 3e-16 seq43102 100 3e-16 seq2068 98.7 1e-15 seq40427 96.9 4e-15 seq14466 93.3 5e-14 seq24354 87.8 2e-12 >seq45459 Length=4245 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| || |||||||| || || |||| ||| ||| | | |||||| | Sbjct 2984 CTGATCGACACATACATTAAGGACCAGGCCGACAAGATGCACCTCCTCAACGCCATCGAG 3043 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || || ||||| |||| || || ||| ||||||| | ||||||| || | | | Sbjct 3044 ACCGTGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAGTGGTGCGACTCGC-GACA 3102 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | |||| || ||||| | |||| || || || ||||| || |||||| || Sbjct 3103 TGCCTCTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGG 3162 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||||||||| || | ||||||||||||||||| |||||||| |||||||| ||||| Sbjct 3163 ATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTC 3222 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || || ||||| ||||| ||| || ||||| Sbjct 3223 AAACGAGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTTTGC 3267 >seq4998 Length=959 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| || |||||||| || || |||| ||| ||| | | |||||| | Sbjct 741 CTGATCGACACATACATTAAGGACCAGGCCGACAAGATGCACCTCCTCAACGCCATCGAG 682 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || || ||||| |||| || || ||| ||||||| | ||||||| || | | | Sbjct 681 ACCGTGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAGTGGTGCGACTCGC-GACA 623 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | |||| || ||||| | |||| || || || ||||| || |||||| || Sbjct 622 TGCCTCTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGG 563 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||||||||| || | ||||||||||||||||| |||||||| |||||||| ||||| Sbjct 562 ATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTC 503 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || || ||||| ||||| ||| || ||||| Sbjct 502 AAACGAGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTTTGC 458 >seq2764 Length=7933 Score = 111 bits (122), Expect = 2e-19 Identities = 304/453 (67%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||| | || |||| || || ||||||||| || |||||||| || |||||| Sbjct 4155 TTCGCCGAGAGGCTAATCGCCTTCGCTACTGTTGAGGGGATATTCTTCTCGGGGTCCTTC 4096 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 || || || | ||||| |||||||| ||||||||||| || ||| |||||| || ||| Sbjct 4095 TGTGCCATATTCTGGCTGAAGAAGCGGGGTCTCATGCCTGGACTCACCTTCTCGAATGAG 4036 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG-GT-GGAACTTTTCAAATTAT 94975 || ||| ||| |||||||| | ||| |||||| || | | ||| || | Sbjct 4035 CTGATCAGTCGAGACGAGGGGTTGCACTGCTCATTTGCGTGTCAGCTGTATTCCAA--AC 3978 Query 94976 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATT 95034 | | || | ||| ||| || ||| || | |||| ||||| || || | Sbjct 3977 TCAAAAACAAGCTGACGCAGGAGCATA-TCAATCGCATAATAAGAGAAGCAGTAGATGTC 3919 Query 95035 GAGAAAGGATTCATATTGGATGCCCTT-CCATGCGCTCTCATCGGTATGAATTCTGAAAA 95093 || || | ||||| | ||||| ||| || | ||| | ||||| |||||||| | Sbjct 3918 GAAAAGAGCTTCATCTGCGATGCGCTTCCCGTCAGCT-TGATCGGGATGAATTCAGGCCT 3860 Query 95094 AATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGA-TCGGGGTGC-CT 95151 ||| ||||||| |||| ||| | ||| | || | | | || | ||||| | Sbjct 3859 CATGGGCCAATATATCGAGTTTGTGGCGGATCGTATGCTCA--CCGACTTGGGGTACGAG 3802 Query 95152 CCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAG 95211 || ||| | ||||||||| || || | ||||| | || ||||| || || ||| Sbjct 3801 CCGCTTTACAGAAGCAAGAATCCGTTCGATTGGATGGACATGATCAGCCTTGAAGGCAAG 3742 Query 95212 ACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||||| ||||| || |||||||| || || ||| Sbjct 3741 ACAAATTTCTTTGAGAAGAGGGTGGGCGAATAT 3709 >seq2697 Length=14000 Score = 104 bits (114), Expect = 3e-17 Identities = 259/387 (67%), Gaps = 26/387 (7%) Strand=Plus/Plus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| || | |||| | ||| ||||||||||| || ||||||| ||| Sbjct 11295 GGCCAGAAGTGGTGGATGAAGTTGATGACGAGGCCCTTGATGTGTGAGCCGTCGTGATCT 11354 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA--GTCCT 169256 ||||| ||||||||||||| |||| || || || ||| ||||||| |||| Sbjct 11355 TGATCCGCCATGATCATGAGATGACCGTATCGCAG---GGA-----CTTGATATTCTCCT 11406 Query 169257 -----TACCCTGT-------TGAAGACCCAAGATCT-TCTTGAGATCGTTGAACTCTTGG 169303 ||| ||| | || |||| ||||| | || || ||| ||| | | Sbjct 11407 CACTGTACGTTGTCCCAAACTTGAGTCCCATGATCTCTACCAAGTTC-ATGATCTCCTCG 11465 Query 169304 TTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGG 169363 || | | ||| | | | || ||||| || || ||| || || ||| Sbjct 11466 TTCTTCATTATCTGAGCGTGCGTTGCGTCGCGGACGTTGAGTGGCTTGCCCTTGAGTGGG 11525 Query 169364 AAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGC-GACTGCGAGAGTCTTCGC 169422 || ||||||||| ||| ||||| || ||| ||| ||||| || ||||| | ||| || Sbjct 11526 AACACACCGTAGAAATCTCGACCCACAACGCTGAG-CCCGCTCACCGCGAGGGACTTGGC 11584 Query 169423 CGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTT 169482 ||||| |||||||||| ||||||||| || | || | || || || || ||||| Sbjct 11585 GGAGTCTCCCTCGGTGATGATGAGCGTGCAGTCCTTGGACTTGGCAGTGCCGGCGTTGTT 11644 Query 169483 CGCATCATCCAATTTGGGAATACCAGT 169509 || ||||| | ||| | ||| ||||| Sbjct 11645 GGCGTCATCAAGTTTTGTAATGCCAGT 11671 >seq50892 Length=141790 Score = 100 bits (110), Expect = 3e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 2222 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 2163 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 | | |||| | |||| | | | | |||||||||||| ||||| || ||||| || Sbjct 2162 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 2103 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 2102 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 2043 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||||||| |||||||| || || || || || |||||| ||| || || | Sbjct 2042 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 1983 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || || || | || | ||||||||||||||| Sbjct 1982 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 100 bits (110), Expect = 3e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 8787 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 8846 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 | | |||| | |||| | | | | |||||||||||| ||||| || ||||| || Sbjct 8847 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 8906 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 8907 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 8966 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||||||| |||||||| || || || || || |||||| ||| || || | Sbjct 8967 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 9026 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || || || || || | || | ||||||||||||||| Sbjct 9027 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 9071 >seq2068 Length=11277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 168464 CCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAA 168523 || |||||||| || || |||||||| ||| ||| || || |||||||||||||| Sbjct 4852 CCGCCCATGAGGCGAGTTCCAAACTGGCCAATAGGCAGTAGCAGGTTGATATTGTTTGAT 4911 Query 168524 CCCATGTAGTCATTCGCCA-ACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTG 168582 |||| | ||| | ||||| ||||| || || | ||| | | || |||||||| Sbjct 4912 CCCACGAAGTTCTGCGCCATACTTG-TGATTGTTGCATGAAGACTGGCCTCTCCGTGGTG 4970 Query 168583 GTACGCACTCTTCTCTGCGACAAATGCC-GCCAACTGCGCCACTTTCATCTCATCCTTGA 168641 || ||| | | ||| ||| || ||| || || ||||| || || ||||| ||||| | Sbjct 4971 ATAGGCAGTGTGCTCCGCG-CAGTAGCCAGCTAATTGCGCAACCTTGATCTCGTCCTTCA 5029 Query 168642 GATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 |||| | |||||| || | || || ||| | |||||| ||||| || || || Sbjct 5030 GATTGCGCTTGAAGCAGGCATGCAAAATCTTTCTTTGCGATGGCTTTAGTCCGTC 5084 >seq40427 Length=10030 Score = 96.9 bits (106), Expect = 4e-15 Identities = 249/374 (67%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| || | ||||| ||||| ||||||||||| || ||||||| ||| Sbjct 5781 GGCCAGAAGTGGTGGATGAAATTGATGATGAGGCCCTTGATGTGTGAGCCGTCGTGATCT 5840 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATA--GTCCT 169256 ||||| ||||||||||||| |||| || || || ||| ||||||| |||| Sbjct 5841 TGATCCGCCATGATCATGAGATGACCGTATCGCAG---GGA-----CTTGATATTCTCCT 5892 Query 169257 -----TAC--CCTGTTGA-----AGACCCAAGATCT-TCTTGAGATCGTTGAACTCTTGG 169303 ||| | | |||| || |||| |||| | || || ||| ||| | | Sbjct 5893 TCGTGTACGTCGTTTTGAATTTGAGCCCCATTATCTCTACCAAGTTC-ATGATCTCCTCG 5951 Query 169304 TTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGG 169363 || | | ||| | | | ||| ||||| || || ||| || || ||| Sbjct 5952 TTCTTCATTATCTGAGCGTGCGTGGCGTCGCGGACGTTGAGTGGCTTGCCCTTGAGTGGG 6011 Query 169364 AAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCC 169423 || || |||||| ||| ||||| || || ||| || || ||||| | ||| || Sbjct 6012 AACACTCCGTAGAAATCTCGACCCACAACACTGAGTCCGCTCACCGCGAGGGACTTGGCG 6071 Query 169424 GAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTC 169483 ||||| |||||||||| ||||||||| || | || | || || || || ||||| Sbjct 6072 GAGTCTCCCTCGGTGATGATGAGCGTGCAGTCCTTGGACTTGGCAGTGCCGGCGTTGTTG 6131 Query 169484 GCATCATCCAATTT 169497 || ||||| | ||| Sbjct 6132 GCGTCATCAAGTTT 6145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 168460 CTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTT 168519 ||| || ||||| |||| |||||||| ||||| | || | |||||| ||||| ||||| Sbjct 4896 CTTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 4955 Query 168520 TGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCACCG 168577 || || | ||||| | |||| || || || | | || || |||| || ||| Sbjct 4956 TGTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCG 5013 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 ||||| ||||| | |||| ||| || | || | ||| || || || ||||| | Sbjct 5014 TGGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 5073 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 || | ||||| | ||| ||||| ||| |||||||| || || | ||||||||||| Sbjct 5074 TTCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 5132 >seq14466 Length=1393 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 168460 CTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTT 168519 ||| || ||||| |||| |||||||| ||||| | || | |||||| ||||| ||||| Sbjct 71 CTTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 130 Query 168520 TGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCACCG 168577 || || | ||||| | |||| || || || | | || || |||| || ||| Sbjct 131 TGTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCG 188 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 ||||| ||||| | |||| ||| || | || | ||| || || || ||||| | Sbjct 189 TGGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 248 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 || | ||||| | ||| ||||| ||| |||||||| || || | ||||||||||| Sbjct 249 TTCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 307 >seq24354 Length=8886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCA 105811 ||| || ||||| || |||||||| || ||||||| ||| |||| ||||||||||| Sbjct 8044 AAGGAGCTGTACAAGACGGTTTGGGAGATGAAGATGAGGGACCTCATCGACATGGCCGCG 8103 Query 105812 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857 || | || || ||||||||||| || || ||| ||||||| |||| Sbjct 8104 GACAGGGGACGGTTCATTGATCAGAGCCAGAGTCTGAATCTATTCA 8149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582889758642080