Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18597 141 1e-28 seq48315 136 5e-27 seq33104 122 1e-22 seq10981 120 3e-22 seq18371 111 2e-19 seq9453 98.7 1e-15 seq24354 93.3 5e-14 seq40427 84.2 2e-11 >seq18597 Length=5183 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || || ||||| |||||| | Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| || || || || || Sbjct 3016 GACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 2957 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| |||||||||| || ||||| | ||||| || Sbjct 2956 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 2897 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | || | ||||| || |||||| Sbjct 2896 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGA 2849 Score = 123 bits (136), Expect = 3e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || |||||||| || ||||| ||||| || || ||||| || ||| | | Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || | || | ||| | || || |||||||||||||| || || || || || | Sbjct 3243 ACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAAC 3184 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 ||||||| ||||| || || ||||| |||||||| | || ||||| | ||||| || Sbjct 3183 AGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACA 3124 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 3123 TCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTGG 3078 >seq48315 Length=10477 Score = 136 bits (150), Expect = 5e-27 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAG--CATCTGTAAACTCGACGATTTCCGTG 80964 ||||||||| ||||| ||||| | ||| || | || |||| |||||| || || ||| Sbjct 2684 GGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTA--CTCGACAATCTCGGTG 2627 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | || || |||| || || || ||||| | |||||| |||||| ||||||| | Sbjct 2626 CAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCCGTTGCAGTGG 2567 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| |||||| || || |||||||||||||| || | |||||||||| ||| Sbjct 2566 TCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTGGGAGTCGAGGATGGCGAACCAG 2507 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCG 81110 | || | ||||||| | |||||| Sbjct 2506 AGCTGCTGGGCCTTGATCGTCTTGCG 2481 Score = 120 bits (132), Expect = 3e-22 Identities = 430/664 (65%), Gaps = 30/664 (5%) Strand=Plus/Minus Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 ||||||||| |||||||| || |||||| || ||| || || |||||| Sbjct 2307 GCACTCGTTCGGGCACATGAGCGTCCAGTCCCCGTTCGTCTGGACCCTCTCCATGAACAG 2248 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTT 81302 ||| ||||||||||| ||| ||||||||| | | | || ||| | || ||||| Sbjct 2247 GTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATCTCGTTCCCGTGGTT 2188 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 | | ||||| ||| | | ||||||||| ||||| ||||| | ||| | ||||| Sbjct 2187 CTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTCGATGTACGCCGCGAT 2128 Query 81363 CGACCCCTTGC---GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 ||| ||||| | | ||| ||||||| |||||| || || || ||| || || || Sbjct 2127 CGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTTGAAGACGCG 2068 Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479 | ||| || | ||| || | ||| |||||||| ||| ||| |||| | || Sbjct 2067 GAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACGACGCGGACGC 2008 Query 81480 GCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTT--TGAAATCTGAGCACAC 81537 ||| || || ||| || || ||||| || || | |||| ||| ||| | | Sbjct 2007 GCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGCGTACTTGCTGA----TGACCGC-G 1953 Query 81538 CGGTTCATG---GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAG-CAAGAA 81593 | |||| || || || || || || |||||| || | | | | || | || ||| Sbjct 1952 CAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACG-CACGTCAGGAA 1894 Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAAT 81653 ||||| |||||||| ||| | | ||||| |||||||| || || || ||||| | Sbjct 1893 GCAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTGGCGTGGGT 1834 Query 81654 GAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTG 81713 ||| | || | | |||| || || || ||| | || ||| | ||| Sbjct 1833 GAAGAACCGCTGGCTGAGGAGGTTGTACGTCTCGAGGACCCTCTCGATGTCGCCCATGTG 1774 Query 81714 AATACCGATAGCTACACGCATAAACATGTACTGGGG-CG--------TCTCGCC-TGC-- 81761 || |||| || || ||||| | | || |||||| || ||| ||| ||| Sbjct 1773 TATCCCGACCGCGACGCGCATGAGGAGGTGCTGGGGACGCTCGGCGATCTGGCCGTGCAT 1714 Query 81762 ---GTTCAGGTACATCTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTAGTCGCG 81818 | |||||| ||||| | ||||||| ||||||||| ||||| || ||||||| Sbjct 1713 CTTGAGCAGGTAGGACTTCTCGAGGGTCTTGAAGCCGAAGTAGTCGAACTCGAAGTCGCG 1654 Query 81819 TTCG 81822 ||| Sbjct 1653 GTCG 1650 >seq33104 Length=5523 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27438 GACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCA 27497 ||| || || || || || ||| || |||| | |||| ||| | ||| | || || || Sbjct 3063 GACGATAACGCTCGATGTCGAGCCAAGTGACACAATTGACAATGTTAAGACAAAGATCCA 3122 Query 27498 GGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA 27557 ||| ||||| || ||||| || || || ||| | | |||||||| || ||||| || || Sbjct 3123 GGATAAGGAAGGCATTCCACCGGATCAACAGAGGTTGATTTTTGCGGGAAAGCAGCTGGA 3182 Query 27558 GGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||| ||||| || | || |||||| |||| ||||| || || || || || ||||| Sbjct 3183 GGATGGCCGTACACTTTCTGATTATAATATCCAGAAGGAGTCGACGCTCCACCTGGTCTT 3242 Query 27618 GCGTCTTCGCGGTGG 27632 |||||| || ||||| Sbjct 3243 GCGTCTCCGAGGTGG 3257 >seq10981 Length=11828 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 || ||| || || || || || ||| || | || | |||| || | ||| | || || Sbjct 2205 CAGGACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGAT 2264 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||||||||| || || ||||| || ||| | || || || || || |||||||| Sbjct 2265 CCAGGACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACT 2324 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||| || ||| || | || || || | || |||||||| || || ||| | || Sbjct 2325 TGAGGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGT 2384 Query 27615 CTTGCGTCTTCGCGGTGGACA 27635 |||||||||||| || ||||| Sbjct 2385 CTTGCGTCTTCGTGGCGGACA 2405 >seq18371 Length=23815 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27435 CAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAAT 27494 || ||| || || || || || ||| || | || | |||| || | ||| | || || Sbjct 23605 CAGGACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGAT 23664 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||||||||| || || || || || ||| | || || || || || || ||||| Sbjct 23665 CCAGGACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACT 23724 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||| || ||| || | || || || | || |||||||| || || ||| | || Sbjct 23725 TGAGGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGT 23784 Query 27615 CTTGCGTCTTCGCGGTGGACA 27635 |||||||||||| || ||||| Sbjct 23785 CTTGCGTCTTCGTGGCGGACA 23805 >seq9453 Length=4450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || |||||||||||||| || || || || || |||||||| || || || Sbjct 974 AAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCG 1033 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || ||||| | ||||| || |||| ||||| || || Sbjct 1034 GGCAAGCAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGACG 1093 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | || || ||||| || Sbjct 1094 CTCCACCTCGTCCTCCGGCTCCGCGGCGG 1122 >seq24354 Length=8886 Score = 93.3 bits (102), Expect = 5e-14 Identities = 346/535 (65%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || ||||| ||||||||||| || | | ||| ||| | ||| || ||||| | | Sbjct 7238 GCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCATAGA 7179 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || || || || ||||||| ||| || ||| |||| ||||||||| Sbjct 7178 TTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCAGCGTCCTTA 7119 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || | ||||||| | || ||||| | || | | ||| ||||| |||| | || Sbjct 7118 TAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTATGGCCGCCCAGAGCTGC 7059 Query 81091 CGCGCCTTGACCACCTTGCGGAATTTGCCTTCG----GCCACATACTTGGCGTA-AGCTT 81145 ||||| | | | || ||| | |||| || | | ||||||| |||| ||||| Sbjct 7058 CGCGC-TCGT--ATCTGGCGCT-TGTGCCGTCCCTCCGACTCATACTTCTCGTAGAGCTT 7003 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || |||| | ||||| || |||| | || ||||||| ||||||||||||| Sbjct 7002 C-TCAAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACATCAGGC 6944 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| | ||| | ||| || |||||||| ||| |||| ||| | || || Sbjct 6943 TCCAAACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACCCGTAGA 6884 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 |||| | | |||| |||||| | || ||||| || | | ||| | ||| | Sbjct 6883 ACAGATTCCTTGCGCGCTGCTCCTCCTTTCCATGGTTTTTTCGGAGGTTGAGCACGTCGA 6824 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382 ||||| || ||||| ||||| | || | ||||| | || ||| | ||||| Sbjct 6823 AAATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCCCGCCAC 6764 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 |||| | ||| ||| | | |||| || || || || | ||| || | || ||| Sbjct 6763 CCTGATCGACATAATGTGACGTCGAGTCGAAGACTCGGAGCATGGGAACGAGACC 6709 >seq40427 Length=10030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 245/373 (66%), Gaps = 22/373 (6%) Strand=Plus/Minus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATT 31269 || || || ||||||||| ||||| || |||||| | || |||||||| || || Sbjct 6145 AAACTTGATGACGCCAACAACGCCGGCACTGCCAAGTCCAAGGACTGCACGCTCATCATC 6086 Query 31270 ACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAAT 31329 |||||||| ||||| || ||| | || || | || | ||||||||||| || || Sbjct 6085 ACCGAGGGAGACTCCGCCAAGTCCCTCGCGGTGAGCGGACTCAGTGTTGTGGGTCGAGAT 6026 Query 31330 GCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTC---CGTT 31386 | ||| ||||| || ||| |||||||| | ||||| || |||||| | || | Sbjct 6025 TTCTACGGAGTGTTCCCACTCAAGGGCAAGCCACTCAACGTCCGCGACGCCACGCACGCT 5966 Query 31387 AAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCAT 31446 ||| | | | | || || ||| | ||| || | |||| | |||| ||| || Sbjct 5965 ---CAGATAATGAAGAACGAGGAGATCATGAACTTGGTAGAGATAATGGGGC-TCA-AAT 5911 Query 31447 GGCAAGGTATATAATTCACTGA-GAGAAT----------TGCGGTACGGTCGCCTCATGA 31495 || | || ||| | |||||| |||| ||||||| ||||||| Sbjct 5910 TCAAAACGACGTA---CACGAAGGAGAATATCAAGTCCCTGCGATACGGTCATCTCATGA 5854 Query 31496 TTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAATATGTTCC 31555 | ||| | || ||||| ||||||| ||||||||||| || || | ||| | ||| Sbjct 5853 TCATGGCGGATCAAGATCACGACGGCTCACACATCAAGGGCCTCATCATCAATTTCATCC 5794 Query 31556 ACGTCTACTGGCC 31568 || || |||||| Sbjct 5793 ACCACTTCTGGCC 5781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569947597039040