Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18371 116 2e-21 seq10981 107 1e-18 seq18597 98.7 6e-16 >seq18371 Length=23815 Score = 116 bits (128), Expect = 2e-21 Identities = 128/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| ||||||||||| || ||||| |||||||| ||||| || Sbjct 23802 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 23743 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| ||||| || || | | |||||| |||||||| Sbjct 23742 AAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGG 23683 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC 34646 | ||||||||||| |||| ||||| || ||| | ||||||||| Sbjct 23682 ATCCCCTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCAATTGTGTC 23636 >seq10981 Length=11828 Score = 107 bits (118), Expect = 1e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| ||||||||||| || ||||| |||||||| ||||| || Sbjct 2402 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 2343 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || |||||||| || ||||| || || | | |||||| || ||||| Sbjct 2342 AAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGG 2283 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC 34646 | ||||||||||| |||| ||||| || ||| | ||||||||| Sbjct 2282 ATCCCCTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCAATTGTGTC 2236 >seq18597 Length=5183 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| || ||||| || || || || || || Sbjct 3087 AGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 3146 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||||||| || || || | |||||| Sbjct 3147 CCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCC 3206 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | || ||||| ||| || || | ||| Sbjct 3207 TTGTCCTGGATC-TTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGT 3265 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 ||||| || ||||| | || || || |||||||||| Sbjct 3266 GATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || |||||| || ||||| || || || || || || Sbjct 2859 AGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 2918 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||||||| || || || | |||||| Sbjct 2919 CCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCC 2978 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | || ||||| ||| || || | ||| Sbjct 2979 TTGTCCTGGATC-TTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGT 3037 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | || || ||||| |||||||| Sbjct 3038 GATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314534390145836