Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18597 134 1e-26 seq18371 96.9 3e-15 seq10981 93.3 4e-14 seq9453 93.3 4e-14 seq3706 93.3 4e-14 seq20946 82.4 7e-11 >seq18597 Length=5183 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||| ||| | || || ||||| || || ||||| Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || || |||||| Sbjct 3016 GACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 2957 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | || || | ||| | || || |||||| Sbjct 2956 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 2897 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || ||||| | ||| | || ||||| Sbjct 2896 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTGG 2850 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| || || || || |||||||| ||| | || || ||||| || || ||||| | Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || |||| || | ||||| || || || ||||| || || || || || ||||||| Sbjct 3243 ACACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAAC 3184 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 ||||| | || | |||||| || || | || ||| | ||| | || || ||||||| Sbjct 3183 AGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACA 3124 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || |||||||||||| | || ||||| | ||| | || ||||| || Sbjct 3123 TCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 3075 >seq18371 Length=23815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || || |||| | ||||| | ||||| ||| || || ||| Sbjct 23612 ATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAGGAC 23671 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || || || || || ||||||||| | | || | |||||| |||||| | || || Sbjct 23672 AAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTTGAGGAT 23731 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | || |||||||||||||| ||||| ||||| | |||||||| |||||| Sbjct 23732 GGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTTGCGT 23791 Query 27204 TTGCGGGGTGG 27214 | || || || Sbjct 23792 CTTCGTGGCGG 23802 >seq10981 Length=11828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || || || |||| | ||||| | ||||| ||| || || ||| Sbjct 2212 ATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGATCCAGGAC 2271 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || || || || || ||||||||| | | || | |||||| || ||| | || || Sbjct 2272 AAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGAT 2331 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | ||| | || |||||||||||||| ||||| ||||| | |||||||| |||||| Sbjct 2332 GGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTTGCGT 2391 Query 27204 TTGCGGGGTGG 27214 | || || || Sbjct 2392 CTTCGTGGCGG 2402 >seq9453 Length=4450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27011 GACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACA 27070 ||| ||||| | || || || || || || || || ||| |||| || | ||||| Sbjct 919 GACAGGCAAAACCATCACCCTCGATGTCGAGCCCTCGGACACGATCGACAACGTCAAGAC 978 Query 27071 AAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 || || || ||||| || ||||| || || |||||||||||| | || | ||| ||||| Sbjct 979 CAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCGGGCAA 1038 Query 27131 ACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || | || ||| | |||| | || || |||||||| || ||||||||||| Sbjct 1039 GCAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGAC 1092 >seq3706 Length=3511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/223 (69%), Gaps = 16/223 (7%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||| ||| | || || || || || || ||||| Sbjct 3294 ATGCAGATCTTTGTTAAAACCCTGACCGGGAAGACGATCACCCTCGACGTCGAGCCGTCG 3235 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATA---------CCA 27098 || ||||||| | ||||| || || || ||||| | |||| | || Sbjct 3234 GATACGATTGACAACGTCAAGACTAAGATCCAGGACAAGGGGGGCACATGGGGCATCCCC 3175 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG----- 27153 || |||||||||||| | || | | ||| || | | || ||| | |||||| Sbjct 3174 CCTGATCAACAGCGTCTGATTTTTGGCGGGAAGTAGCTCGAGGACGG--CGACCGCACCC 3117 Query 27154 TTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||| || |||||||| || ||||||| |||| | || ||||| Sbjct 3116 TTTCGGACTACAACATCCAGAAGGAGTTGACCCTCCACTTGGT 3074 >seq20946 Length=4204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| || || ||||| || || ||||| Sbjct 186 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGATCATCACCCTTGACGTCGACCCGTCG 127 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| | | ||||| || || || ||| | || ||||| || || |||||| Sbjct 126 GAAACGATCAACAACGTCAAGGCGAAGATCCAGGACGAGGAGGGCATCCCTCCTGATCAA 67 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | | |||| || || | || ||| | ||| ||| || |||||| Sbjct 66 CAGCGTCTGATTTTCACCGGGAAGCAGCTCGAGGACGGCCGCACCCTTTTGGACTACAAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434641726659840