Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq50892 728 0.0 seq43102 728 0.0 >seq50892 Length=141790 Score = 728 bits (806), Expect = 0.0 Identities = 752/982 (77%), Gaps = 2/982 (0%) Strand=Plus/Minus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| | || | ||| | ||| | | ||| | ||||||||| Sbjct 86540 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 86481 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||| | ||| |||| | | | || ||| | | ||||| ||| | || ||||| Sbjct 86480 GGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATC 86421 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 ||||| || || || |||||||| ||||| || |||||||||||||| ||| || | || Sbjct 86420 GCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATAC 86361 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 || ||||||||||||||||| ||||| |||| || |||||||| || || | |||||| Sbjct 86360 GGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTC 86301 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||||||||||||||||| ||||||| || ||| | ||||| || || || |||||| Sbjct 86300 TACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAA 86241 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTT 176463 | | || || |||||| | | ||| | || ||||||||| || |||||||| | Sbjct 86240 TTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTA 86181 Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCA 176523 || ||| | |||| |||||||||||||||| || |||| |||||| |||||| | ||| Sbjct 86180 AGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCA 86121 Query 176524 GCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || ||||| ||| | || || ||| |||||||||| ||||||||||||||||||||| Sbjct 86120 GCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 86061 Query 176584 CTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTA 176643 | || || || ||||| || ||||| ||||| ||||||||||| || |||||||| || Sbjct 86060 TTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTA 86001 Query 176644 ATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCA 176703 |||||||||||||| ||| ||| || || ||||| || ||||| ||| | ||| || Sbjct 86000 ATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCT 85941 Query 176704 ATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAA 176763 |||||||| | || |||||| | | | || ||||| |||||||||||| Sbjct 85940 ATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACT 85881 Query 176764 AACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGT 176823 |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| Sbjct 85880 AACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 85821 Query 176824 TACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 |||||||||||| | |||||||| || ||||| ||||| |||||| | | | |||||| Sbjct 85820 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTC 85761 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || || |||||| | | |||||||| ||| | |||||| || | |||||| Sbjct 85760 TTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATG 85701 Query 176944 GCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAAGT 177002 ||||||||| | |||||||||||||||||||| ||||| | || ||| ||| || Sbjct 85700 GCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA-TTCTCAAGGTCGTGT 85642 Query 177003 GATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGA 177062 ||| ||||||| |||||| |||||||||| | | ||||||||||| |||||||| Sbjct 85641 TATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGA 85582 Query 177063 GCGTAATGCTCACAACTTCCCA 177084 ||||| || |||||||||||| Sbjct 85581 ACGTAACGCGCACAACTTCCCA 85560 Score = 728 bits (806), Expect = 0.0 Identities = 752/982 (77%), Gaps = 2/982 (0%) Strand=Plus/Plus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| | || | ||| | ||| | | ||| | ||||||||| Sbjct 125549 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 125608 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||| | ||| |||| | | | || ||| | | ||||| ||| | || ||||| Sbjct 125609 GGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATC 125668 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 ||||| || || || |||||||| ||||| || |||||||||||||| ||| || | || Sbjct 125669 GCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATAC 125728 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 || ||||||||||||||||| ||||| |||| || |||||||| || || | |||||| Sbjct 125729 GGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTC 125788 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||||||||||||||||| ||||||| || ||| | ||||| || || || |||||| Sbjct 125789 TACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAA 125848 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTT 176463 | | || || |||||| | | ||| | || ||||||||| || |||||||| | Sbjct 125849 TTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTA 125908 Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCA 176523 || ||| | |||| |||||||||||||||| || |||| |||||| |||||| | ||| Sbjct 125909 AGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCA 125968 Query 176524 GCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || ||||| ||| | || || ||| |||||||||| ||||||||||||||||||||| Sbjct 125969 GCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 126028 Query 176584 CTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTA 176643 | || || || ||||| || ||||| ||||| ||||||||||| || |||||||| || Sbjct 126029 TTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTA 126088 Query 176644 ATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCA 176703 |||||||||||||| ||| ||| || || ||||| || ||||| ||| | ||| || Sbjct 126089 ATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCT 126148 Query 176704 ATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAA 176763 |||||||| | || |||||| | | | || ||||| |||||||||||| Sbjct 126149 ATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACT 126208 Query 176764 AACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGT 176823 |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| Sbjct 126209 AACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 126268 Query 176824 TACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 |||||||||||| | |||||||| || ||||| ||||| |||||| | | | |||||| Sbjct 126269 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTC 126328 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || || |||||| | | |||||||| ||| | |||||| || | |||||| Sbjct 126329 TTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATG 126388 Query 176944 GCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAAGT 177002 ||||||||| | |||||||||||||||||||| ||||| | || ||| ||| || Sbjct 126389 GCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA-TTCTCAAGGTCGTGT 126447 Query 177003 GATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGA 177062 ||| ||||||| |||||| |||||||||| | | ||||||||||| |||||||| Sbjct 126448 TATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGA 126507 Query 177063 GCGTAATGCTCACAACTTCCCA 177084 ||||| || |||||||||||| Sbjct 126508 ACGTAACGCGCACAACTTCCCA 126529 >seq43102 Length=56976 Score = 728 bits (806), Expect = 0.0 Identities = 752/982 (77%), Gaps = 2/982 (0%) Strand=Plus/Minus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| | || | ||| | ||| | | ||| | ||||||||| Sbjct 27251 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 27192 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||| | ||| |||| | | | || ||| | | ||||| ||| | || ||||| Sbjct 27191 GGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATC 27132 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 ||||| || || || |||||||| ||||| || |||||||||||||| ||| || | || Sbjct 27131 GCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATAC 27072 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 || ||||||||||||||||| ||||| |||| || |||||||| || || | |||||| Sbjct 27071 GGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTC 27012 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||||||||||||||||| ||||||| || ||| | ||||| || || || |||||| Sbjct 27011 TACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAA 26952 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTT 176463 | | || || |||||| | | ||| | || ||||||||| || |||||||| | Sbjct 26951 TTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTA 26892 Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCA 176523 || ||| | |||| |||||||||||||||| || |||| |||||| |||||| | ||| Sbjct 26891 AGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCA 26832 Query 176524 GCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || ||||| ||| | || || ||| |||||||||| ||||||||||||||||||||| Sbjct 26831 GCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 26772 Query 176584 CTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTA 176643 | || || || ||||| || ||||| ||||| ||||||||||| || |||||||| || Sbjct 26771 TTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTA 26712 Query 176644 ATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCA 176703 |||||||||||||| ||| ||| || || ||||| || ||||| ||| | ||| || Sbjct 26711 ATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCT 26652 Query 176704 ATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAA 176763 |||||||| | || |||||| | | | || ||||| |||||||||||| Sbjct 26651 ATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACT 26592 Query 176764 AACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGT 176823 |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| Sbjct 26591 AACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 26532 Query 176824 TACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 |||||||||||| | |||||||| || ||||| ||||| |||||| | | | |||||| Sbjct 26531 TACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTC 26472 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || || |||||| | | |||||||| ||| | |||||| || | |||||| Sbjct 26471 TTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATG 26412 Query 176944 GCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAAGT 177002 ||||||||| | |||||||||||||||||||| ||||| | || ||| ||| || Sbjct 26411 GCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA-TTCTCAAGGTCGTGT 26353 Query 177003 GATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGA 177062 ||| ||||||| |||||| |||||||||| | | ||||||||||| |||||||| Sbjct 26352 TATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGA 26293 Query 177063 GCGTAATGCTCACAACTTCCCA 177084 ||||| || |||||||||||| Sbjct 26292 ACGTAACGCGCACAACTTCCCA 26271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603110487037440