Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq16886 145 4e-30 >seq16886 Length=2726 Score = 145 bits (160), Expect = 4e-30 Identities = 290/421 (69%), Gaps = 14/421 (3%) Strand=Plus/Plus Query 66475 CGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGT 66534 ||| ||||| | || ||| |||||| ||| || || ||||||| ||| || ||||| Sbjct 1395 CGGGTCTATGACACTTGACACCGCCCTTGGC---GGAGGATACCCGAAGGGTCGAGTGGT 1451 Query 66535 GGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAA 66594 ||||||||||| || ||||| ||||| || | || || |||||| ||| |||| | Sbjct 1452 CGAAATCTACGGACCCGAATCCTCAGGTAAAACCACGCTCGCTCTCCATGCGCTGGCGGA 1511 Query 66595 TGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGA 66654 ||||||| | ||| || | || || | | || || |||||| | ||||| || Sbjct 1512 GGCGCAGATGAACGGAGGTATTGCAGCGTTTGTGGATGCAGAGCACGCGCTGGATCCCTC 1571 Query 66655 GTACGCCAAGGCGCTC--GGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACC 66712 || || || ||||| || |||||| | ||||||||| |||| ||||| ||| || Sbjct 1572 CTATGC--AGCCGCTCTGGGAGTGGACGTGGACAACCTCCTGGTTTCGCAGCCTGATTCC 1629 Query 66713 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGT--CAAG-TCTGGCGAGCTGTCCATC 66769 || || ||| || || || || |||| | || ||| |||| || || || Sbjct 1630 GGAGAAATGGCGCTTGACATAGTGGACCAGTTGGTGAGAAGCTCTG--CAGTTG-ATGTC 1686 Query 66770 GTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGG 66829 |||| || || |||||||||||| || || |||||||| || || ||||| || | Sbjct 1687 ATCGTGGTGGATAGCGTGGCGGCCCTTGTCCCCCGCGCCGAACTGGAGGGCGAAATGAGT 1746 Query 66830 GACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGC 66889 |||| || || || || || || | | ||||| |||| ||||| || |||| ||| Sbjct 1747 GACATGCAAGTAGGACTCCAAGCAAGGTTGATGTCCAAGGCAATGCGAAAAATCAC-GGC 1805 Query 66890 A 66890 | Sbjct 1806 A 1806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242710166499528