Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4331 190 2e-43 >seq4331 Length=8668 Score = 190 bits (210), Expect = 2e-43 Identities = 331/478 (69%), Gaps = 5/478 (1%) Strand=Plus/Plus Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||| || |||| ||||||||||||| ||||||||| || || ||| Sbjct 6752 ACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCGGGG 6811 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||||| || |||| |||||||| | || || ||||| | | | ||||||| | Sbjct 6812 TTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATGCAG 6871 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC-TCCCCCGATACTCCGC 6906 | |||||||||| | |||| ||| ||||| || ||| | || |||||||| Sbjct 6872 TCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCG-CGCATGTCCTCGTACTCCGC 6930 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 ||| ||||| ||||||||||||||||| ||||| || | |||||||||||| || | Sbjct 6931 CCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGCGA 6990 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 | |||||| ||| || || || || || |||| ||||||| || | | | Sbjct 6991 CAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTCTT 7050 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 | | |||||| || | |||||||| ||| |||||||| || ||||||||| |||| Sbjct 7051 GTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCGGCCAC 7110 Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGC---CCCGAAGGTTGTA 7143 |||| ||||| || || |||||||| || || || | ||| | |||||| ||| Sbjct 7111 GCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGGGAGCGCGCCGTCGCGAAGGGAGTA 7170 Query 7144 TCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGG 7201 || ||| |||||| ||| || || ||||| |||| ||||||| || || Sbjct 7171 GCGCATCTGCACCCCGAACTTGGACTTCGTGCCGGTCCCCGTCCTGTCCCCCCTCTGG 7228 Score = 190 bits (210), Expect = 2e-43 Identities = 331/478 (69%), Gaps = 5/478 (1%) Strand=Plus/Minus Query 34144 CCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATA 34203 || || ||||||| |||| ||||| || || ||| |||||| ||| || || Sbjct 7228 CCAGAGGGGGGACAGGACGGGGACCGGCACGAAGTCCAAGTTCGGGGTGCAGATGCGCTA 7169 Query 34204 CAACCTTCGGG---GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGT 34260 | |||||| | ||| | || || || |||||||| || || ||||| |||||| Sbjct 7168 CTCCCTTCGCGACGGCGCGCTCCCCCTCCTCACGACGAAGCGCACGTTCTGGAGGGGCGT 7109 Query 34261 GGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCG 34320 || ||||||||| || |||||||| ||| |||||||| | || |||||| | | Sbjct 7108 GGCCGAGGAGCTCCTCTGGTTCGTCTCGGGCTCCACGAACGCGAACGAGCTCGCCGACAA 7049 Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380 | | | || ||||||| |||| || || || || || ||| |||||| | | Sbjct 7048 GAACATACACATATGGGACGGGAACGGCTCGCGCGAGTTCCTCGACTCGCGGGGCCTGTC 6989 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 || |||||||||||| | || ||||| ||||||||||||||||| ||||| ||||| Sbjct 6988 GCACCGCGAGGAGGGCGACCTCGGGCCGGTGTACGGGTTCCAGTGGAGGCACTTCGGGGC 6929 Query 34441 GGAGTATCGGGGGA-GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 |||||| || | ||| || ||||| ||| |||| | |||||||||| || Sbjct 6928 GGAGTACGAGGACATGCG-CGCCGACTACAAGGGGAAGGGGGTGGACCAGCTGGCCGACT 6870 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 ||||||| | | | ||||| || || | |||||||| |||| || ||||||| Sbjct 6869 GCATCGACAAGATCAGGAACAACCCGGAGGATCGCAGGATCGTCATGTCGGCTTGGAACC 6810 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 | || || ||||||||| ||||||||||||| |||| || |||||||| Sbjct 6809 CCGCCGACCTGGACAAGATGGCGCTGCCCCCGTGCCACATGTTCTGTCAGTTCTACGT 6752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447977237874240