Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18597 152 1e-31 seq9453 145 2e-29 seq33104 111 4e-19 seq10981 111 4e-19 seq18371 105 2e-17 seq20946 100 7e-16 seq3706 89.7 1e-12 >seq18597 Length=5183 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || |||| ||||| | ||||| Sbjct 2865 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 2924 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || || ||||| ||||| || | || ||||||||| Sbjct 2925 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 2984 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || ||||| || || ||||||||| Sbjct 2985 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTC 3044 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 3045 TTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 3093 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 3152 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || || ||||| ||||| || | || ||||||||| Sbjct 3153 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCC 3212 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || || || || ||||||||| Sbjct 3213 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTC 3272 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || || || || ||||| || || | ||||| Sbjct 3273 TTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||||||| ||| || Sbjct 1107 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCC 1048 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || ||||| || || || | || ||||||||| Sbjct 1047 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCC 988 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || || ||||| ||||| || Sbjct 987 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTT 928 Query 211083 TTTCCCGT 211090 || || || Sbjct 927 TTGCCTGT 920 >seq33104 Length=5523 Score = 111 bits (122), Expect = 4e-19 Identities = 134/181 (74%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||| || || ||||| || ||||| |||||||| | ||| || | ||||| || Sbjct 3240 GACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGAAAGTGTACGGCCATCCTC 3181 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||| || || || || | | ||||| || || |||| |||||||| ||||| Sbjct 3180 CAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGGAATGCCTTCCTTATCCTG 3121 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGT 211081 ||||||| || || || || || |||||| ||| || || ||||| || ||||| Sbjct 3120 GATCTTTGTCTTAACATTGTCAATTGTGTCA---CTTGGCTCGACATCGAGCGTTATCGT 3064 Query 211082 C 211082 | Sbjct 3063 C 3063 >seq10981 Length=11828 Score = 111 bits (122), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | ||| | || || || || || || || ||||| ||||||| | ||| Sbjct 2397 ACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGT 2338 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || ||||| || |||||||| || | ||||| || || || | || Sbjct 2337 GCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCC 2278 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||||||||||||| || ||||| || || ||||| |||| || || || Sbjct 2277 CTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTC---GCTTGGCTCGACATC 2221 Query 211070 GAGAGTGATCGTC 211082 ||| ||||||||| Sbjct 2220 GAGCGTGATCGTC 2208 >seq18371 Length=23815 Score = 105 bits (116), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | ||| | || || || || || || || ||||| ||||||| | ||| Sbjct 23797 ACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGT 23738 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || |||||||| || | ||||| || || || | || Sbjct 23737 GCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCC 23678 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 |||||||||||||||||| || ||||| || || ||||| |||| || || || Sbjct 23677 CTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTC---GCTTGGCTCGACATC 23621 Query 211070 GAGAGTGATCGTC 211082 ||| ||||||||| Sbjct 23620 GAGCGTGATCGTC 23608 >seq20946 Length=4204 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 |||| ||| || ||| |||||| | || || || |||||||| || | ||| || || Sbjct 2 TGGACGTTGTAGTCCAAAAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGTGAAAATCAGA 61 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || ||||| |||||||| | || |||| |||||||||||| || ||||| | ||| Sbjct 62 CGCTGTTGATCAGGAGGGATGCCCTCCTCGTCCTGGATCTTCGCCTTGACGTTGTTGATC 121 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || || || || || || || ||||| |||| || || || ||||| || || | | Sbjct 122 GTTTCCGACGGGTCGACGTCAAGGGTGATGATCTTGCCGGTCAGGGTCTTGACGAAAATC 181 Query 211110 TGCAT 211114 ||||| Sbjct 182 TGCAT 186 >seq3706 Length=3511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT---CCATCTTCCAG 210967 ||| || || |||| || |||||||| || |||| |||||| | || || || || Sbjct 3079 GTGGAGGGTCAACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGTCGCCGTCCTCGAG 3138 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA--CTCCTT-------CCTT 211018 || ||| || | || || || || ||||| ||||| || | | || | |||| Sbjct 3139 CTACTTCCCGCCAAAAATCAGACGCTGTTGATCAGGGGGGATGCCCCATGTGCCCCCCTT 3198 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| || ||||| || || || || || || || ||||| ||||| Sbjct 3199 GTCCTGGATCTTAGTCTTGACGTTGTCAATCGTATCCGACGGCTCGACGTCGAGGGTGAT 3258 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || || ||||| | |||||| Sbjct 3259 CGTCTTCCCGGTCAGGGTTTTAACAAAGATCTGCAT 3294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158396170591580