Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18597 91.5 1e-13 seq18371 84.2 1e-11 seq10981 84.2 1e-11 >seq18597 Length=5183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||||| || ||||| || || || |||||||| || || || || | ||| Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || || | || || || | | ||||| || ||| | || || |||||| Sbjct 3243 ACACGATCGACAACGTCAAGACGAAGA-TCCAGGACAAGGAGGGTATCCCCCCTGATCAA 3185 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || |||| ||||| | || |||||| Sbjct 3184 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 3125 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3124 ATCCAGAAGGAGTCGAC 3108 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || |||||||| || || ||||| | || Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| || || | || || ||||| Sbjct 3016 GACACGATCGACAACGTCAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGATCA 2958 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || ||||| || || || || || | ||||| | || ||||| Sbjct 2957 ACAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 2898 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2897 CATCCAGAAGGAGTCGAC 2880 >seq18371 Length=23815 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23644 ACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGC 23702 |||||||| ||||| || || | | ||||| |||| || | || ||||| | | Sbjct 23609 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGA-TCCA 23667 Query 23703 TGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGA 23762 ||||| || || | ||||| ||||||||| | | || || ||||| |||||||| || Sbjct 23668 GGACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTTGA 23727 Query 23763 AGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | |||||| ||| ||||||||||| || || || || || | ||||| || || Sbjct 23728 GGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 23787 >seq10981 Length=11828 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23644 ACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGC 23702 |||||||| ||||| || || | | ||||| |||| || | || ||||| | | Sbjct 2209 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAAGA-TCCA 2267 Query 23703 TGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGA 23762 ||||| || || | ||||||||||||||| | | || || ||||| || ||||| || Sbjct 2268 GGACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTTGA 2327 Query 23763 AGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || | |||||| ||| ||||||||||| || || || || || | ||||| || || Sbjct 2328 GGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337799950813136