Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq38168 122 2e-22 seq18597 111 4e-19 seq50892 102 2e-16 seq43102 102 2e-16 seq20124 95.1 3e-14 >seq38168 Length=32109 Score = 122 bits (134), Expect = 2e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 ||| ||||| ||||| || | || | ||||| || | |||||||| || | || || Sbjct 31857 CCATCTTTATAACGTAATCGTAACAGGTCATGCTATTTTAATGATTTTTTTCATGGTAAT 31798 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | | || || ||||| ||||||||||| ||||| | ||||| ||||| ||||| Sbjct 31797 GCCAACTTTAATTGGTGGTTTTGGAAATTGATTTGTTCCACTTATGATCGGTGCCCCTGA 31738 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||||| |||||| | | || || || ||||||||| || |||| ||||| ||||| Sbjct 31737 TATGGCGTTTCCACGTATGAATAACATTAGTTTTTGACTATTACCACCTTCATTATT 31681 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||| ||||| | ||||||| |||| ||| ||||| | ||| |||||| Sbjct 31462 AAAGGTAGGTTATGAAAAGATAAAGACTTAACTCGCATGTTAAAAACAGTACAAATAAAA 31521 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| || |||||| |||| || |||||||||||| ||||||||||| Sbjct 31522 TTAATTGCACCTAAAATCGAAGATGCTCCTGAAACATGTAAACTAAAAATTGCTAAATCT 31581 Query 371485 ACGGAACCGCCGGAGTGAGC 371504 || ||||| || || ||||| Sbjct 31582 ACAGAACCACCAGAATGAGC 31601 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 |||||||| || |||||||| || | |||||| | || | ||||| || || || | Sbjct 31285 TCAGGATGGCCGAAAAATCAAAAAAGGTGTTGAAATAGAACTGGATCACCACCCCCAGCA 31344 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||||||||||||||||| ||||| Sbjct 31345 GGATCAAAAAAAGTAGTATTAAAATTTCTATCGGTTAA 31382 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/155 (74%), Gaps = 7/155 (5%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || | ||||||||||||| | ||| |||| |||||| ||||| ||||||| | Sbjct 5286 TATGTCAAAGGTTGGTAAGATTTTGCGCGGATTATCGCATTAAATCACATGCTCCACCAC 5227 Query 7784 ---TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG 7840 || || | || |||||| | |||| |||| || |||||| ||||| | |||||| Sbjct 5226 TCGTTGTAGA--CTCCCGTCAATACCTTTAAGTTCAAATCTTGCGATCGTACTCCTCAGG 5169 Query 7841 TGGAATATTTA-CGCGTTAGCTTAATTAATATAAA 7874 |||| ||| |||||||||||| ||| |||| Sbjct 5168 CAGAATGCTTATGGCGTTAGCTTAA-AAATCTAAA 5135 >seq18597 Length=5183 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| || | | || | || || Sbjct 3093 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 3152 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| ||||| || || || ||||| || || || ||||| |||||||| Sbjct 3153 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCC 3212 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || ||||| | ||||||||| Sbjct 3213 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTC 3272 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 || || |||| || || | ||| | |||| Sbjct 3273 TTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| || | | || | ||||| Sbjct 2865 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 2924 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| ||||| || || || ||||| || || || || || |||||||| Sbjct 2925 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 2984 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || ||||| | ||||||||| Sbjct 2985 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTC 3044 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 3045 TTCCCGGTCA 3054 >seq50892 Length=141790 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 73292 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 73233 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 73232 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGATACTTAACGC 73173 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 73172 GTTAGCTT 73165 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 138797 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 138856 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 138857 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGATACTTAACGC 138916 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 138917 GTTAGCTT 138924 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || ||||| || ||||| || || |||||||||| Sbjct 60811 GAAGATTTGACCATCGGTAATTGAAATTACATTCGTTGGGATGTATGCTGAAACATCACT 60752 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 |||||||||||| | ||| ||||| ||||| Sbjct 60751 TGCTTGTGTTTCAATAACTGGTAATGCTGT 60722 >seq43102 Length=56976 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 14003 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 13944 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 13943 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGATACTTAACGC 13884 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 13883 GTTAGCTT 13876 >seq20124 Length=11018 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || ||||| || ||||| || || |||||||||| Sbjct 8630 GAAGATTTGACCATCGGTAATTGAAATTACATTCGTTGGGATGTATGCTGAAACATCACT 8571 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 |||||||||||| | ||| ||||| ||||| Sbjct 8570 TGCTTGTGTTTCAATAACTGGTAATGCTGT 8541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191753605559048