Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4331 168 5e-37 >seq4331 Length=8668 Score = 168 bits (186), Expect = 5e-37 Identities = 274/401 (68%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 29831 CTCACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 || ||||| |||||||| |||| |||||||| || || ||||| ||| ||| Sbjct 6749 CTTACGTAGAACTGACAGAACATG---TGGCACGGGGGCAGCGCCATCTTGTCCAGGTCG 6805 Query 29888 TTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 29947 ||||||||| || ||| || ||| | | || || |||||||||||||| ||| Sbjct 6806 GCGGGGTTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCG 6865 Query 29948 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNN 30007 | | || |||||| ||||||||| ||||| |||||| | Sbjct 6866 ATGCAGTCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCGCGCATGTCCTCGTAC 6925 Query 30008 NNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30067 |||| |||||||||||||||||||||||||| || ||||| ||||| || | | Sbjct 6926 TCCGCCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGG 6985 Query 30068 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30127 ||| | ||||| | ||| | || || | || ||||| ||||||| || | || Sbjct 6986 TGCGACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATG 7045 Query 30128 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30187 ||| |||| |||||| || | ||| ||||| || ||||||||| || |||||||| Sbjct 7046 TTCTTGTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCG 7105 Query 30188 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 | ||| || |||| || | ||| |||||||||||||| Sbjct 7106 GCCACGCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGG 7146 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 || ||| |||| |||| || | | |||| | ||| ||||| | ||| | ||| Sbjct 6308 TTCATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCC 6367 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 || |||| ||||| || || || ||||| | ||||||||||| |||||||| | || Sbjct 6368 ACATGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGC 6427 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 |||||||| | |||| ||||| || ||||| | ||| || ||||| || || || Sbjct 6428 CCGGTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACG 6487 Query 29777 CCGAGCCCCATGTC 29790 |||||||||||||| Sbjct 6488 CCGAGCCCCATGTC 6501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405911278798312