Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4331 232 5e-56 >seq4331 Length=8668 Score = 232 bits (256), Expect = 5e-56 Identities = 290/398 (73%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 27325 CTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 |||||||| |||||||| | ||||||||| || || ||||| | ||| ||| | Sbjct 6749 CTTACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCG 6808 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| || ||| || ||| | | || || |||||||||||||| ||| | | Sbjct 6809 GGGTTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATG 6868 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 || |||||| ||||||||| ||||| |||||| | | ||||||| |||||| Sbjct 6869 CAGTCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCGCGCATGTCCTCGTACTCC 6928 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || ||||| |||||||| ||||||||||||||||| || ||||| ||||| || | |||| Sbjct 6929 GCCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGC 6988 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 | ||||| | ||| | || || | || ||||| ||||||| || | || | Sbjct 6989 GACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTC 7048 Query 27625 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 27684 || |||| |||||| || | ||| ||||| || ||||||||| || |||||||| | Sbjct 7049 TTGTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCGGCC 7108 Query 27685 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 ||| || |||| || | ||| |||||||||||||| Sbjct 7109 ACGCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGG 7146 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150 || ||| |||| |||| || | | |||| | ||| ||||| ||||| | ||| Sbjct 6308 TTCATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCC 6367 Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 || || | |||||| || || |||||||| | ||||||||||| |||||||| | || Sbjct 6368 ACATGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGC 6427 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 |||||||| | |||| ||||| || ||||| | ||| || ||||| || || || Sbjct 6428 CCGGTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACG 6487 Query 27271 CCGAGCCCCATGTC 27284 |||||||||||||| Sbjct 6488 CCGAGCCCCATGTC 6501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369278014544852