Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq50892 86.0 1e-11 seq43102 86.0 1e-11 >seq50892 Length=141790 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 73901 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCTCTGGTTCAAATCCAG 73959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 138188 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCTCTGGTTCAAATCCAG 138130 >seq43102 Length=56976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 14612 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCTCTGGTTCAAATCCAG 14670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769817169074720