Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq50892 82.4 6e-11 seq43102 82.4 6e-11 seq26355 82.4 6e-11 >seq50892 Length=141790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 32322 GGATGGAGGGACTCGAACCCACAC--CCGAAG--ACTAGAACCTAAATCTAGCGCGTCTG 32377 |||||||| ||||||||| | || | ||| ||||| ||||||||||||||||||| Sbjct 78645 GGATGGAGAGACTCGAACTCTCAAAACAAAAGTTACTAGGACCTAAATCTAGCGCGTCTA 78586 Query 32378 CCAATTTCGCCACATCCCCATTTTATTT 32405 ||||||||||||||||| | | |||||| Sbjct 78585 CCAATTTCGCCACATCCGC-TATTATTT 78559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 32322 GGATGGAGGGACTCGAACCCACAC--CCGAAG--ACTAGAACCTAAATCTAGCGCGTCTG 32377 |||||||| ||||||||| | || | ||| ||||| ||||||||||||||||||| Sbjct 133444 GGATGGAGAGACTCGAACTCTCAAAACAAAAGTTACTAGGACCTAAATCTAGCGCGTCTA 133503 Query 32378 CCAATTTCGCCACATCCCCATTTTATTT 32405 ||||||||||||||||| | | |||||| Sbjct 133504 CCAATTTCGCCACATCCGC-TATTATTT 133530 >seq43102 Length=56976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 32322 GGATGGAGGGACTCGAACCCACAC--CCGAAG--ACTAGAACCTAAATCTAGCGCGTCTG 32377 |||||||| ||||||||| | || | ||| ||||| ||||||||||||||||||| Sbjct 19356 GGATGGAGAGACTCGAACTCTCAAAACAAAAGTTACTAGGACCTAAATCTAGCGCGTCTA 19297 Query 32378 CCAATTTCGCCACATCCCCATTTTATTT 32405 ||||||||||||||||| | | |||||| Sbjct 19296 CCAATTTCGCCACATCCGC-TATTATTT 19270 >seq26355 Length=323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 32322 GGATGGAGGGACTCGAACCCACAC--CCGAAG--ACTAGAACCTAAATCTAGCGCGTCTG 32377 |||||||| ||||||||| | || | ||| ||||| ||||||||||||||||||| Sbjct 99 GGATGGAGAGACTCGAACTCTCAAAACAAAAGTTACTAGGACCTAAATCTAGCGCGTCTA 158 Query 32378 CCAATTTCGCCACATCCCCATTTTATTT 32405 ||||||||||||||||| | | |||||| Sbjct 159 CCAATTTCGCCACATCCGC-TATTATTT 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399991752640900