Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18597 176 9e-39 seq18371 122 2e-22 seq9453 120 6e-22 seq3706 120 6e-22 seq10981 118 2e-21 seq46929 113 9e-20 seq33104 102 2e-16 seq7033 95.1 3e-14 seq13375 91.5 3e-13 seq31783 89.7 1e-12 seq47501 84.2 5e-11 seq2068 84.2 5e-11 >seq18597 Length=5183 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 3077 ACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 3136 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || |||||||| || |||| ||| ||||| ||| || Sbjct 3137 GAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGG 3196 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 3197 GATACCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGAC 3256 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 || || ||||||||||| || |||| ||||| ||||| ||||||| Sbjct 3257 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 2850 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2909 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || |||||||| || |||| ||| ||||| ||| || Sbjct 2910 AGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 2969 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | || || Sbjct 2970 ATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACG 3029 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| |||||||| || |||||||| Sbjct 3030 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq18371 Length=23815 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | |||| ||| | ||| ||| || || |||||||| || | Sbjct 23802 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 23743 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| |||||||| |||||||| ||||| ||||||| | ||||| || ||| Sbjct 23742 AAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGG 23683 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||||| || ||| | || || ||||| | ||||| Sbjct 23682 ATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACA 23623 Query 283053 TCGAGAGTGATCGTC 283067 ||||| ||||||||| Sbjct 23622 TCGAGCGTGATCGTC 23608 >seq9453 Length=4450 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || || || | ||| || || |||||||||||||| | Sbjct 1122 CCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 1063 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || || || ||||||| ||| ||||| || || Sbjct 1062 AGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGG 1003 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 1002 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACA 943 Query 283053 TCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||||| || || || ||| Sbjct 942 TCGAGGGTGATGGTTTTGCCTGTC 919 >seq3706 Length=3511 Score = 120 bits (132), Expect = 6e-22 Identities = 148/203 (73%), Gaps = 12/203 (6%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG---CCATCCTCTAGTTGTTTCCCGGCA 282965 || || |||||||||||||| | ||| |||||| || ||||| || | |||||| || Sbjct 3092 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGTCGCCGTCCTCGAGCTACTTCCCGCCA 3151 Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCT---------CCTTGTCTTGGATCTTT 283016 || |||| ||| ||||| ||| || || ||| ||||||| |||||||| Sbjct 3152 AAAATCAGACGCTGTTGATCAGGGGGGATGCCCCATGTGCCCCCCTTGTCCTGGATCTTA 3211 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || ||| | || || || ||||| | ||||| ||||| ||||||||||| || ||| Sbjct 3212 GTCTTGACGTTGTCAATCGTATCCGACGGCTCGACGTCGAGGGTGATCGTCTTCCCGGTC 3271 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | || ||||| || |||||||| Sbjct 3272 AGGGTTTTAACAAAGATCTGCAT 3294 >seq10981 Length=11828 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | |||| ||| | ||| ||| || || |||||||| || | Sbjct 2402 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 2343 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| |||||||| ||||| || ||||| ||||||| | ||||| || ||| Sbjct 2342 AAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGG 2283 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||||| || ||| | || || ||||| | ||||| Sbjct 2282 ATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACA 2223 Query 283053 TCGAGAGTGATCGTC 283067 ||||| ||||||||| Sbjct 2222 TCGAGCGTGATCGTC 2208 >seq46929 Length=1090 Score = 113 bits (124), Expect = 9e-20 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||| |||| || || || |||| |||||| || ||||| | |||||||||||||| | Sbjct 393 CCAGCACGGAGACGCAGGACCAAATGTAAAGTACTTTCGTGCTGGATGTTGTAGTCGGAT 334 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||| |||||||| || |||||||| || || || |||| ||||| | ||| || Sbjct 333 AGCGCACGGCCATCTTCGAGTTGTTTGCCAGCGAATATCAGCCGTTGCTCGTCGGTGGGC 274 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTT----TTACGGTATCGATAGTGTCCGAAGCTTC 283048 | |||||| || ||||| ||||||| ||||| || || ||||| || | Sbjct 273 TTGCCCTCCACTTCCTGGAT-TTTGCTTTTTATTACG---TCAATCGTGTCTTCAG-GAC 219 Query 283049 GAC-TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||||||| || |||| ||||| ||| |||| ||||| Sbjct 218 AACAATGGAGAGAGATCGTCTTTCCTGTCATTGTCTTCACGGATATTTGCAT 167 >seq33104 Length=5523 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | ||||| || | ||| || || ||||| || || |||| Sbjct 3258 ACCACCTCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGA 3199 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || ||||| ||||| | ||||| || || Sbjct 3198 AAGTGTACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGG 3139 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||||| || || | || || ||||| | ||||| Sbjct 3138 AATGCCTTCCTTATCCTGGATCTTTGTCTTAACATTGTCAATTGTGTCACTTGGCTCGAC 3079 Query 283052 TTCGAGAGTGATCGTCTTA 283070 ||||| || |||||| || Sbjct 3078 ATCGAGCGTTATCGTCCTA 3060 >seq7033 Length=2152 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 282893 CAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAG 282952 || ||||| ||||||||||| ||||||||| ||| | ||||| |||||||| || || Sbjct 285 CAAATGTACAGTGCTTTCTTTCTGGATGTTGCAGTAGGATAGCGTCCGGCCATCTTCGAG 226 Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 |||| | ||||| || | | || |||||||| || || |||||| |||| |||| Sbjct 225 TTGTCTGCCGGCGAACACGAGTCGCTGTTGGTCGGGGGGTATGCCCTCCCTGTCCCGGAT 166 Query 283013 CTTTGCTT----TTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | |||||| ||||| || || ||||| | || || ||| |||| |||| Sbjct 165 C-TTGCTTTTGATTACG---TCAATCGTGTCTTCGGGACAAACGTCTAGACTGATTGTCT 110 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||| ||||| | ||| || | ||| Sbjct 109 TTCCTATCAATGTCTTGATGAAAATTTTCAT 79 >seq13375 Length=5022 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||||||||| ||||||||||||| | ||||| ||||| || || |||||||| ||| Sbjct 543 GTGCTTTCTTTCTGGATGTTGTAGTAGGATAGCGTCCGGCCTTCTTCGAGTTGTTTGCCG 484 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 | |||||| || |||||||| || || |||||| |||| ||||| Sbjct 483 AAACAGATCAGTCGCTGTTGGTCGGTGGGTATGCCCTCCCTGTCCTGGAT 434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 282894 AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953 ||||| || || ||||| | |||||||||||||| | ||||| ||||| || || || Sbjct 4385 AGATGAAAAGTACTTTCGTGCTGGATGTTGTAGTCGGATAGCGTCCGGCCGTCTTCGAGG 4326 Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATA--CCCTCCTTGTCTTGGA 283011 ||||| ||||| ||||||| || ||||||| | |||||| |||||| |||| | || Sbjct 4325 TGTTTGCCGGCGTAGATCAATCGCTGTTGGT--CGGGGAATATGCCCTCCCTGTCATAGA 4268 Query 283012 T 283012 | Sbjct 4267 T 4267 >seq31783 Length=267 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA-AGCTTC 283048 || || ||||||||||| |||||||| | | ||| | || || |||||||| ||||| Sbjct 5 GGGATGCCCTCCTTGTCCTGGATCTTCGTGTAGACGTTGTCAATCGTGTCCGACAGCTT- 63 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 64 GACATCAAGGGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 114 >seq47501 Length=4302 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 316180 GCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGG 316239 || || | |||| ||||||||| |||||||||| || || || ||||||||||||| Sbjct 3152 GCGTACCTCCATCGGATGTACTCATTGGGCGTCTTGCTCAGGTGGCTCTCGATGTGGTGG 3211 Query 316240 AAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACG 316290 || |||||||| || ||||| || | ||| || || |||||||| ||| Sbjct 3212 AAGGCGTGCTGGGCGACGTAGGCGATACGGGCGTTGGGGTGCTTCCAGACG 3262 >seq2068 Length=11277 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 273831 CCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 |||||||| || ||||||||| ||| || ||||| || ||| | | ||| ||| Sbjct 4870 CCAAACTGGCCAATAGGCAGTAGCAGGTTGATATTGTTTGATCCCACGAAGTTCTGCGCC 4929 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 ||| | ||| || | ||||| |||| |||||||||||||| |||| || ||| Sbjct 4930 ATACTTGTGATTGTTGCATGAAGACTGGCCTCTCCGTGGTGATAGGCAGTGTGCTCCGCG 4989 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAA 274010 || ||| || || |||||||| | ||| | ||| || |||||||| || | Sbjct 4990 CAGTAGCCAGCTAATTGCGCAACCTTGATCTCGTCCTTCAGATTGCGCTTGAAGCAGGCA 5049 Query 274011 TACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGAC 274051 | ||| | ||| | ||||| ||||| | || |||| ||| Sbjct 5050 TGCAAAATCTTTCTTTGCGATGGCTTTAGTCCGTCAATGAC 5090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046056669779368