Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18597 116 3e-21 seq33104 82.4 5e-11 >seq18597 Length=5183 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 3095 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 3154 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| || |||| |||||| ||||| | || | ||| ||||| ||| Sbjct 3155 GAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTG 3214 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||| | | || || || | || |||||||| Sbjct 3215 GATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTT 3274 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 || || |||||||| ||||| || |||| Sbjct 3275 CCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| || | ||| ||| | || || Sbjct 2867 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTC 2926 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| || |||| |||||| ||||| | || | || ||||| ||| Sbjct 2927 GAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 2986 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||| | | || || || | || |||||||| Sbjct 2987 GATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTT 3046 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||| ||||| Sbjct 3047 CCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq33104 Length=5523 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| || | ||| |||||||| ||||| |||||| ||||| || ||||| | Sbjct 3257 CCACCTCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGAA 3198 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| || | || ||||||||||| || ||||| ||||| | ||| ||||| | || Sbjct 3197 AGTGTACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGGA 3138 Query 44231 ACACCTTCCTTTTCCGTTATCTT 44253 | |||||||| ||| ||||| Sbjct 3137 ATGCCTTCCTTATCCTGGATCTT 3115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359767117304364