Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9453 131 4e-25 seq18371 120 7e-22 seq18597 118 3e-21 seq10981 111 4e-19 >seq9453 Length=4450 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| ||||| ||||||||||| || || ||| ||||| ||||| |||||||| Sbjct 920 ACAGGCAAAACCATCACCCTCGATGTCGAGCCCTCGGACACGATCGACAACGTCAAGACC 979 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||| || || || || |||||||| || || Sbjct 980 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCGGGCAAG 1039 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || ||| |||| || | || || ||| |||| || || || || || || Sbjct 1040 CAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTCCAC 1099 Query 178125 CTTGT 178129 || || Sbjct 1100 CTCGT 1104 >seq18371 Length=23815 Score = 120 bits (132), Expect = 7e-22 Identities = 137/183 (75%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 |||||||| ||||| || || |||| ||||| || || |||||||| |||||| Sbjct 23609 ACGATCACGCTCGATGTCGAGCCAAGC---GACACAATTGACAACGTCAAGACAAAGATC 23665 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| || || ||||| ||||| || || |||| ||||||||||||||||| || Sbjct 23666 CAGGACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTT 23725 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||| | || | | ||||| ||| | || || ||||| || || ||| | || Sbjct 23726 GAGGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTC 23785 Query 178131 TTG 178133 ||| Sbjct 23786 TTG 23788 >seq18597 Length=5183 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||||||||| || || || || ||| Sbjct 3301 CAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGGAC 3242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 3241 ACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAACAG 3182 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| || || | || || | || || ||| || Sbjct 3181 CGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATC 3122 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 3121 CAGAAGGAGTCGACCCTCCA-CTTG 3098 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || ||||||||||| || || || || ||| Sbjct 3073 CAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCGGAC 3014 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 3013 ACGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 2954 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| ||||| | || || | || || ||| || Sbjct 2953 CGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATC 2894 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2893 CAGAAGGAGTCGACCCTCCA-CTTG 2870 >seq10981 Length=11828 Score = 111 bits (122), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 |||||||| ||||| || || |||| ||||| || || |||||||| |||||| Sbjct 2209 ACGATCACGCTCGATGTCGAGCCAAGC---GACACAATTGACAACGTCAAGACAAAGATC 2265 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| || || ||||| || || || || |||| |||||||||||||| || || Sbjct 2266 CAGGACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTT 2325 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||| | || | | ||||| ||| | || || ||||| || || ||| | || Sbjct 2326 GAGGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTC 2385 Query 178131 TTG 178133 ||| Sbjct 2386 TTG 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202946302557048