Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18597 145 7e-30 seq9453 132 4e-26 seq18371 109 5e-19 seq10981 109 5e-19 seq15268 93.3 4e-14 >seq18597 Length=5183 Score = 145 bits (160), Expect = 7e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| ||||| ||| Sbjct 3078 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 3137 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| |||||||| ||||| |||||||| || | ||| Sbjct 3138 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 3197 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||| || ||| || Sbjct 3198 ATACCCTCCTTGTCCTGGATCTTCGTCTT-GACGTTGTCGATCGTGTCCGACGGCTCGAC 3256 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 || | || ||||| || || ||||| ||||| ||||||||||||| Sbjct 3257 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| ||||| ||| Sbjct 2850 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2909 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| |||||||| ||||| |||||||| || | ||| Sbjct 2910 AGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 2969 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| || ||| || Sbjct 2970 ATGCCCTCCTTGTCCTGGATCTTCGTCTT-GACGTTGTCGATCGTGTCCGACGGCTCAAC 3028 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || ||||| ||||| || || |||||||| Sbjct 3029 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 >seq9453 Length=4450 Score = 132 bits (146), Expect = 4e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||||||||| || || | || || || ||||| ||||||||| ||||| ||||| Sbjct 1125 CCGCCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 1066 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 |||||||| || |||| |||||||||||||| ||||| ||||| |||||||| |||| | Sbjct 1065 GAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGG 1006 Query 41753 GGAACGCTCTCCTTGTCCATGATTTT 41778 || | || |||||||||| ||| || Sbjct 1005 GGGATGCCCTCCTTGTCCTGGATCTT 980 >seq18371 Length=23815 Score = 109 bits (120), Expect = 5e-19 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| || |||| ||| ||||| |||||||||||||| || || || Sbjct 23802 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 23743 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | |||||| | || || || || || |||||||| ||||| | |||||| ||| ||||| Sbjct 23742 AAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGG 23683 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | | |||||||||| ||| ||| ||| ||| | | | |||||||| | ||| | Sbjct 23682 ATC-CCCTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCAATTGTGTCGCTTGGCTCGA 23625 Query 41814 CCTCCACCGTTATCGT 41829 | || | ||| ||||| Sbjct 23624 CATCGAGCGTGATCGT 23609 >seq10981 Length=11828 Score = 109 bits (120), Expect = 5e-19 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| || |||| ||| ||||| |||||||||||||| || || || Sbjct 2402 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 2343 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | |||||| | || || || ||||| |||||||| ||||| | |||||| || ||||| Sbjct 2342 AAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGG 2283 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | | |||||||||| ||| ||| ||| ||| | | | |||||||| | ||| | Sbjct 2282 ATC-CCCTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCAATTGTGTCGCTTGGCTCGA 2225 Query 41814 CCTCCACCGTTATCGT 41829 | || | ||| ||||| Sbjct 2224 CATCGAGCGTGATCGT 2209 >seq15268 Length=1820 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||| || || | || || | ||||| |||||||| Sbjct 355 GCCACCACGGAGACGCAGGACCATATGTAGAGTACATTCTTTTTTGATGTTGTAGTCGGA 296 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||| | || || || | ||| || | ||||||||||||||| ||| ||||||| | || Sbjct 295 GAGGCTCCGGTCATCTTGGAGTTGTTGGCCGGCGAATATCAGTCGCAGTTGGTCGGGGGC 236 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | ||||||| ||| |||||| Sbjct 235 TATGTTCTCCTTTTCCTGGATTTT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462009905310400