Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq10642 123 5e-23 >seq10642 Length=2787 Score = 123 bits (136), Expect = 5e-23 Identities = 442/676 (65%), Gaps = 19/676 (3%) Strand=Plus/Minus Query 318985 AGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATG 319044 |||| ||| ||||| ||||| || ||||| ||||| |||| ||||| ||| || Sbjct 1946 AGGGCCTCCTTGTCCTCACCACCCTGGTAGCGCCACTGGATGTACTCGTTGGCGGTCTTG 1887 Query 319045 TCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGC-AAGACGCATATT 319103 || ||||| | ||||||||||||||| || ||||| || ||||| || || ||| || Sbjct 1886 TCGAGATGCTGCTCGATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAACTTGCA-GTT 1828 Query 319104 TGGATGCTTCCAAACACTACCGAT-GGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGA 319162 || ||||| | | | |||| | | ||||| | | | || ||||| | ||| || | Sbjct 1827 CGGGTGCTTGAAGATAGTACCCTTCGAGGGCTTGAACTCG-CCGGTGAGGAGCTTGATCA 1769 Query 319163 GGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACA-CCGATCCTGGAGTTCAGCGATACC 319221 |||| || || |||||||| |||| | |||| |||| | ||| || ||| || Sbjct 1768 TGGTGGACTTGCCGGCACCGTTGGCGCCGA-CACAGGCGATGCGCGAGGCCATCGAGACG 1710 Query 319222 TGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTA-CCCGGATACTTGAACCCCACACC 319280 || | || | || || || | | || || | ||||| || ||||| ||| | Sbjct 1709 CGGACGTTGATGTGCTC-GAGCTGGGGCTTCTCGCAGCCCGGGTAGGTGAACGAGACATC 1651 Query 319281 GCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 | | |||||||| ||| |||| || ||| || ||||| || |||| ||| Sbjct 1650 GGTCATGGACATGATGGGGCGGCCCTTGGACTTGACGCCGTCGAGCGGGCCCGGCTTGGG 1591 Query 319341 GAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCT 319399 |||||| | | ||| | |||| || ||||||| | | | ||||| || Sbjct 1590 GAACTTGAAGGCCAGCTTGGAGGCGGTGAGATCGTAGTAGGCCTTAGCCTCCGGGAAGC- 1532 Query 319400 TCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAAT 319459 || ||||||| |||||| || |||||||| || || ||||| ||| | ||| | | Sbjct 1531 GCTCGACGAACTTGGACAGGTTGCCCTTGTAGTTGTTGAGCTTGAGG---GTGTCGAAGT 1475 Query 319460 GGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG 319519 ||||||| ||| || |||||||||| || |||||| || || || | | | Sbjct 1474 GGATAATGTGCGTGGCGACGTTGTCGAGGAACTTGGTGTCGTGCGAGACGATGAGCGAGG 1415 Query 319520 AAACGTCCTT--AAGGTT----GATCAGGTATTCAATCAACCACCTCACGTTAGACACAG 319573 |||| ||| | || | || ||||| |||| | |||| ||||| ||| Sbjct 1414 TCACGTTCTTGCACGGCTCGCCCATGAGGTAGTCAACGACCCACTGGACGTTGAGCACGT 1355 Query 319574 AAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTG 319633 | |||||||| ||||| || | || || | | || || ||||||| || | | Sbjct 1354 CCAAGTGGTTGGTGGGCTCATCCATGAGAAGGATATCGGCCTTGCGGAGCATGGCGCAGG 1295 Query 319634 CAAGAGCGAGTTTCAT 319649 || ||||| ||||| Sbjct 1294 TGAGGGCGAGCTTCAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057678111525320