Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq10642 123 5e-23
>seq10642
Length=2787
Score = 123 bits (136), Expect = 5e-23
Identities = 442/676 (65%), Gaps = 19/676 (3%)
Strand=Plus/Minus
Query 318985 AGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATG 319044
|||| ||| ||||| ||||| || ||||| ||||| |||| ||||| ||| ||
Sbjct 1946 AGGGCCTCCTTGTCCTCACCACCCTGGTAGCGCCACTGGATGTACTCGTTGGCGGTCTTG 1887
Query 319045 TCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGC-AAGACGCATATT 319103
|| ||||| | ||||||||||||||| || ||||| || ||||| || || ||| ||
Sbjct 1886 TCGAGATGCTGCTCGATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAACTTGCA-GTT 1828
Query 319104 TGGATGCTTCCAAACACTACCGAT-GGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGA 319162
|| ||||| | | | |||| | | ||||| | | | || ||||| | ||| || |
Sbjct 1827 CGGGTGCTTGAAGATAGTACCCTTCGAGGGCTTGAACTCG-CCGGTGAGGAGCTTGATCA 1769
Query 319163 GGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACA-CCGATCCTGGAGTTCAGCGATACC 319221
|||| || || |||||||| |||| | |||| |||| | ||| || ||| ||
Sbjct 1768 TGGTGGACTTGCCGGCACCGTTGGCGCCGA-CACAGGCGATGCGCGAGGCCATCGAGACG 1710
Query 319222 TGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTA-CCCGGATACTTGAACCCCACACC 319280
|| | || | || || || | | || || | ||||| || ||||| ||| |
Sbjct 1709 CGGACGTTGATGTGCTC-GAGCTGGGGCTTCTCGCAGCCCGGGTAGGTGAACGAGACATC 1651
Query 319281 GCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340
| | |||||||| ||| |||| || ||| || ||||| || |||| |||
Sbjct 1650 GGTCATGGACATGATGGGGCGGCCCTTGGACTTGACGCCGTCGAGCGGGCCCGGCTTGGG 1591
Query 319341 GAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCT 319399
|||||| | | ||| | |||| || ||||||| | | | ||||| ||
Sbjct 1590 GAACTTGAAGGCCAGCTTGGAGGCGGTGAGATCGTAGTAGGCCTTAGCCTCCGGGAAGC- 1532
Query 319400 TCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAAT 319459
|| ||||||| |||||| || |||||||| || || ||||| ||| | ||| | |
Sbjct 1531 GCTCGACGAACTTGGACAGGTTGCCCTTGTAGTTGTTGAGCTTGAGG---GTGTCGAAGT 1475
Query 319460 GGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG 319519
||||||| ||| || |||||||||| || |||||| || || || | | |
Sbjct 1474 GGATAATGTGCGTGGCGACGTTGTCGAGGAACTTGGTGTCGTGCGAGACGATGAGCGAGG 1415
Query 319520 AAACGTCCTT--AAGGTT----GATCAGGTATTCAATCAACCACCTCACGTTAGACACAG 319573
|||| ||| | || | || ||||| |||| | |||| ||||| |||
Sbjct 1414 TCACGTTCTTGCACGGCTCGCCCATGAGGTAGTCAACGACCCACTGGACGTTGAGCACGT 1355
Query 319574 AAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTG 319633
| |||||||| ||||| || | || || | | || || ||||||| || | |
Sbjct 1354 CCAAGTGGTTGGTGGGCTCATCCATGAGAAGGATATCGGCCTTGCGGAGCATGGCGCAGG 1295
Query 319634 CAAGAGCGAGTTTCAT 319649
|| ||||| |||||
Sbjct 1294 TGAGGGCGAGCTTCAT 1279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057678111525320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |