Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 86.0 5e-12
>seq7460
Length=1425
Score = 86.0 bits (94), Expect = 5e-12
Identities = 220/324 (68%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847
||| || || |||||| ||||||||||||||||| | || ||||| || || || || ||
Sbjct 867 GGGCGATCTCGGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTACAA-GA 925
Query 18848 CTGTCAATCAA-ACTATTTA--CAGCAAGGAA-TCGATCAGCTGCAAACTG-TTATAGAT 18902
| || || || | | | || ||| | || ||||| | | | || | |
Sbjct 926 C---CATGCACGACGAGTACGCCGGCCAGGGCGTAGACCAGCT-CGCGCAGCTTGTGCAC 981
Query 18903 ACAATTAAAACAAACCCAGAAAG-CCGACGAATGATTATATCGTCTTGGAATCCAAAGGA 18961
|| || ||||| ||||| || | ||| || ||||| | ||| | ||||| || ||
Sbjct 982 ACCATCAAAACGAACCC-GACGGACCGCCGCATGATCCTCTCGGCCTGGAACCCGGCGGC 1040
Query 18962 TATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGG 19021
||| | | |||| || || || || |||| ||| ||||||||||| | || ||
Sbjct 1041 GTTCCACCTCATGGCCCTGCCGCCCTGCCACATGTTCGCGCAGTTTTACGTGTCCAAGGG 1100
Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081
|| | || |||||| | |||||| | ||||| || || ||||| || || || |||||
Sbjct 1101 CGAGCTCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAA 1160
Query 19082 CATTGCTGGATATGCACTTCTTAC 19105
|||||| || || ||||| ||
Sbjct 1161 CATTGCCTCGTACGCGCTTCTCAC 1184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399451590568380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |