Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7460 86.0 5e-12 >seq7460 Length=1425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 220/324 (68%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||| || || |||||| ||||||||||||||||| | || ||||| || || || || || Sbjct 867 GGGCGATCTCGGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTACAA-GA 925 Query 18848 CTGTCAATCAA-ACTATTTA--CAGCAAGGAA-TCGATCAGCTGCAAACTG-TTATAGAT 18902 | || || || | | | || ||| | || ||||| | | | || | | Sbjct 926 C---CATGCACGACGAGTACGCCGGCCAGGGCGTAGACCAGCT-CGCGCAGCTTGTGCAC 981 Query 18903 ACAATTAAAACAAACCCAGAAAG-CCGACGAATGATTATATCGTCTTGGAATCCAAAGGA 18961 || || ||||| ||||| || | ||| || ||||| | ||| | ||||| || || Sbjct 982 ACCATCAAAACGAACCC-GACGGACCGCCGCATGATCCTCTCGGCCTGGAACCCGGCGGC 1040 Query 18962 TATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGG 19021 ||| | | |||| || || || || |||| ||| ||||||||||| | || || Sbjct 1041 GTTCCACCTCATGGCCCTGCCGCCCTGCCACATGTTCGCGCAGTTTTACGTGTCCAAGGG 1100 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 || | || |||||| | |||||| | ||||| || || ||||| || || || ||||| Sbjct 1101 CGAGCTCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAA 1160 Query 19082 CATTGCTGGATATGCACTTCTTAC 19105 |||||| || || ||||| || Sbjct 1161 CATTGCCTCGTACGCGCTTCTCAC 1184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399451590568380