Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq7460 266 4e-66 >seq7460 Length=1425 Score = 266 bits (294), Expect = 4e-66 Identities = 505/733 (69%), Gaps = 8/733 (1%) Strand=Plus/Minus Query 145538 AGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCT 145597 |||| | ||| ||||| ||||| | |||||| | ||| ||| | || | | ||||| Sbjct 1423 AGACGGACATGTCCATCTTGATGGTCTTGTGGGGCTTGTACCCCACAAGTTCGAGGTCCT 1364 Query 145598 CCGCCCTGAAGTCATCTATGTCC-TCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGC 145656 | | ||||| | || ||||| | || | |||| ||||| |||| ||||| Sbjct 1363 CGTACTTGAAGCCGTCGATGTCGGTGTTGTCGG-TGTTGATCTTGAGCTTGGGGAAGGGG 1305 Query 145657 CGGGGGCTCCTGGTCA-GCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 145715 || || ||| ||| | |||| ||| |||||||| |||||||| ||| | ||| Sbjct 1304 CGCGG-CTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTGGCA 1246 Query 145716 GTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG-AGGCCCGTGAGGTGGGCGACCATGT 145774 ||| || | |||||||||||| ||||||| | || ||||| ||| | |||| || | Sbjct 1245 GTCGCCGATGACGTGGATGAACTCCCCGG-CGCGCAGGCCGGTGCACTTTGCGAGCAGAT 1187 Query 145775 AGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGC 145834 || || || | ||| ||| |||||||||||||| ||||| || ||||| ||||| | Sbjct 1186 GCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACC 1127 Query 145835 GCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGC 145894 ||||||||| ||||| |||||||| || | |||||| ||||| | | ||||| Sbjct 1126 GCTGGTACATTTGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACATGTGGC 1067 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 ||||||||||||||||| | | | |||||||||||||||| | ||||| | | | Sbjct 1066 AGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGAGGATCATGCGGC 1007 Query 145955 TGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCC 146014 | | |||||| | ||||| | || | | ||||||||| |||||||| | Sbjct 1006 GGTCCGTCGGGTTCGTTTTGATGGTGTGCACAAGCTGCGCGAGCTGGTCTACGCCCTGGC 947 Query 146015 CCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCG 146073 | ||| || ||| || | | | |||| |||| || ||||| | ||||||||| ||| Sbjct 946 CGGCGTACTC-GTCGTGCATGGTCTTGTACTCGGCGCCAAAGTGGCGCCACTGGAAGCCG 888 Query 146074 TAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133 || ||||| || || || || ||| | | | || ||| | | | ||| | | Sbjct 887 TAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGTGAGGCCGATCTTGTCAAGGTACGCG 828 Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTG 146193 |||||||||||| ||||||| || | | | || | | ||| |||| | ||| Sbjct 827 CGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTTTTCCTGCAGCGACTTGGCGCTGGTG 768 Query 146194 GACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTG 146253 ||| ||||||||||||||| || ||| ||| || | ||| ||||| | |||||| Sbjct 767 TCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTGGTC 708 Query 146254 GTCAGCAGGGGGA 146266 |||||||| |||| Sbjct 707 GTCAGCAGCGGGA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589997405166560