Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 125 6e-24
seq3754 104 2e-17
seq8082 86.0 5e-12
>seq7528
Length=2088
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | ||||||||||| || ||||| |||||
Sbjct 455 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 396
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| ||||| ||||| || | ||||| | ||| || || |||
Sbjct 395 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGG 336
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || ||||| | ||| || || ||||||
Sbjct 335 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 276
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||||||||| | ||| |||||||| || |||||
Sbjct 275 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||| | || | ||||||||||| || ||||| |||||
Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || |||| || ||||| ||||| || ||||||| | |||||| || |||
Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || ||||| | ||| || || | ||||||
Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACG 504
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||||||||||||| | ||| |||||||| || |||||
Sbjct 503 TCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | ||||||||||| || ||||| |||||
Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || |||| || ||||| ||||| || ||||||| | ||| || || |||
Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || ||||| | ||| || || ||||||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||||||||||||| | ||| |||||||| || |||||
Sbjct 47 TCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || ||||| | ||||| | || | ||||||||||| || ||||| |||||
Sbjct 1140 TCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 1081
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
|| || || ||||||| ||||| ||||| || | || || | ||| || || |||
Sbjct 1080 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGG 1021
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| ||| |||||||| |||||| || ||||| | ||| || || ||||||
Sbjct 1020 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 961
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| ||||| | ||| ||||| || || |||||
Sbjct 960 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||| | || | ||||||||||| || ||||| |||||
Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || |||| || ||||| ||||| || | || || | ||| || || |||
Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || ||||| | ||| || || ||||||
Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 732
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| ||||| | ||| ||||| || || |||||
Sbjct 731 TCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685
>seq3754
Length=471
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| || | || |||||||| || ||||||||||| |
Sbjct 227 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTC 168
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| ||||| ||||| || | ||||| | ||| || || |||
Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || ||||| | ||| || || ||||||
Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || |||||||| || | || || || || || |||||
Sbjct 47 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||| | || | ||||||||||| || ||||| |||||
Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| ||||| ||||| || | ||||| | ||| || || |||
Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | ||| || || ||||||
Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| || || | || ||||| || || |||||
Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422203805399024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |