Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq236 340 2e-88
seq8082 163 3e-35
seq7528 161 1e-34
seq5348 158 1e-33
seq3754 141 1e-28
>seq236
Length=1170
Score = 340 bits (376), Expect = 2e-88
Identities = 547/774 (71%), Gaps = 18/774 (2%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGG--CGCATGT 116648
|| ||||| ||| |||||| | ||||| || || ||| |||||| ||| |||||
Sbjct 223 GACAACCCGGACCGCTTCGTGCTCTTCCCGATCCAGCACCAGGACATCTGGGACGCAT-- 280
Query 116649 ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGA 116708
|||| ||||||||||| ||||||||||| | ||||||| |||||||| | ||||| ||
Sbjct 281 ACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGATGGACCTGGGCCAGGACCAGA 340
Query 116709 GCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTT 116768
|||| || ||| | | ||||| || || |||||||||| |||||||| |
Sbjct 341 AGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCT 400
Query 116769 TCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAG-GAGGT 116826
|||| || ||||||||||| |||||| | |||||| ||| || || |||||
Sbjct 401 TCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTCGAGAACTTTTGC--AGCGAGGT 458
Query 116827 GCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTC 116886
| || ||||||| || |||||||||||||| ||||| ||||| |||||| | |||||
Sbjct 459 GAGCCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTC 518
Query 116887 GGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT-CTTCGGAGGAGAAGCTCCGTT 116945
|| |||| ||| ||| |||||||| ||| | ||| | | | ||||||| | |
Sbjct 519 CGAGGTGTACTCGCTCCTTATCGACACCTACATTCGCGACAGCAG-GGAGAAGGCCGGCC 577
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
| || |||||| |||| ||| |||| ||||| | ||||| ||||||| ||||||
Sbjct 578 TCTTCAACGCCCTCGACACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCT 637
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
|| | ||||| | |||| | ||||||||| || | || |||||||||||||
Sbjct 638 ACATGGACGGCAACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGG 697
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
|| ||||||| |||||| || |||||| || ||||||||||| |||||||||||||
Sbjct 698 GCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 757
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
| || || || ||| ||| ||| | ||| | | |||||||| |||| ||||||||
Sbjct 758 CGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTG 817
Query 117186 CCTGTTTGCTGTT---CAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242
| || |||| || ||||| | | | | || |||| ||| ||||| ||||
Sbjct 818 CTTGCCTGCTCTTCCGCAAGC---TCATCAACCCGCCCAGCGAGGCCCGCGTGCACGAGA 874
Query 117243 TCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCGT 117301
|| ||| ||| |||| |||||| ||| |||| || | || ||||| || ||
Sbjct 875 TCATCAAGTCCGCCGTCGAGATCGAG-TGCGACTTCATCTCGGACGCGCTCCCCGTCGAG 933
Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGAC 117355
|| | || | || | | ||| ||| |||||| |||||||||| |||
Sbjct 934 CTCATTGGCATGAACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGAC 987
>seq8082
Length=462
Score = 163 bits (180), Expect = 3e-35
Identities = 177/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || ||||||||| |||| ||||| || |
Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| ||||| |||||||||||| | || ||
Sbjct 61 GACACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCA 119
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 120 ACAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 179
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
||||||||||||| |||| || || || ||| | ||| | | |||||||||
Sbjct 180 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 231
>seq7528
Length=2088
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || |||||||| ||||| ||||||||| |||| ||||| || |
Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| | || || | ||||| |||||||||||| | || ||
Sbjct 289 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| || || || ||| | ||| || | || ||
Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGG 455
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || || ||||||||| | || ||||| || |
Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| | || || | ||||| |||||||||||| | || ||
Sbjct 973 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| |||| || || || ||| | ||| || | || ||
Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139
Score = 158 bits (174), Expect = 1e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| || || ||||||||| | || ||||| || |
Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| | || || | ||||| |||||||||||| | || ||
Sbjct 745 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||
Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| |||| || || || ||| | ||| || | || |||
Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912
Score = 154 bits (170), Expect = 2e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || |||||||| ||||| |||||||| ||||||| || ||| |
Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| | || || | ||||| |||||||| ||| | || ||
Sbjct 517 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 575
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | ||| ||||| ||||| || |||| ||||| |||| ||||||||
Sbjct 576 GCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 635
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| |||| || || || ||| | ||| || | || |||
Sbjct 636 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || |||||||| ||||| |||||||| |||| ||||| || |
Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| | || || | ||||| |||||||||||| | || ||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | ||| ||||| ||||| || |||| ||||| |||| ||||||||||
Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| |||| || || || ||| | ||| || | || |||
Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228
>seq5348
Length=435
Score = 158 bits (174), Expect = 1e-33
Identities = 165/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
|| || || ||||| || |||||||| || || |||||| |||| ||||| || | |||
Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111
Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | |||| | ||| | || |||| ||||| |||||||||||| | || || ||
Sbjct 112 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 170
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
|| ||||||| ||| ||||| ||||| || |||| ||||| |||| ||| ||||||||
Sbjct 171 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACAT 230
Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||| |||| ||||| || ||| | |||
Sbjct 231 CCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGC 264
>seq3754
Length=471
Score = 141 bits (156), Expect = 1e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| |||| ||||| || |
Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| | || || | ||||| |||||||||||| | || ||
Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| ||||| || |||| ||||| || | |||||| |||
Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||||| | || || || || ||| | |||
Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGC 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515149877256640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |