Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq236 340 2e-88 seq8082 163 3e-35 seq7528 161 1e-34 seq5348 158 1e-33 seq3754 141 1e-28 >seq236 Length=1170 Score = 340 bits (376), Expect = 2e-88 Identities = 547/774 (71%), Gaps = 18/774 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGG--CGCATGT 116648 || ||||| ||| |||||| | ||||| || || ||| |||||| ||| ||||| Sbjct 223 GACAACCCGGACCGCTTCGTGCTCTTCCCGATCCAGCACCAGGACATCTGGGACGCAT-- 280 Query 116649 ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGA 116708 |||| ||||||||||| ||||||||||| | ||||||| |||||||| | ||||| || Sbjct 281 ACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGATGGACCTGGGCCAGGACCAGA 340 Query 116709 GCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTT 116768 |||| || ||| | | ||||| || || |||||||||| |||||||| | Sbjct 341 AGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCT 400 Query 116769 TCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAG-GAGGT 116826 |||| || ||||||||||| |||||| | |||||| ||| || || ||||| Sbjct 401 TCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTCGAGAACTTTTGC--AGCGAGGT 458 Query 116827 GCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTC 116886 | || ||||||| || |||||||||||||| ||||| ||||| |||||| | ||||| Sbjct 459 GAGCCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTC 518 Query 116887 GGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT-CTTCGGAGGAGAAGCTCCGTT 116945 || |||| ||| ||| |||||||| ||| | ||| | | | ||||||| | | Sbjct 519 CGAGGTGTACTCGCTCCTTATCGACACCTACATTCGCGACAGCAG-GGAGAAGGCCGGCC 577 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 | || |||||| |||| ||| |||| ||||| | ||||| ||||||| |||||| Sbjct 578 TCTTCAACGCCCTCGACACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCT 637 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 || | ||||| | |||| | ||||||||| || | || ||||||||||||| Sbjct 638 ACATGGACGGCAACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGG 697 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| |||||| || |||||| || ||||||||||| ||||||||||||| Sbjct 698 GCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 757 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| ||| ||| | ||| | | |||||||| |||| |||||||| Sbjct 758 CGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTG 817 Query 117186 CCTGTTTGCTGTT---CAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242 | || |||| || ||||| | | | | || |||| ||| ||||| |||| Sbjct 818 CTTGCCTGCTCTTCCGCAAGC---TCATCAACCCGCCCAGCGAGGCCCGCGTGCACGAGA 874 Query 117243 TCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 || ||| ||| |||| |||||| ||| |||| || | || ||||| || || Sbjct 875 TCATCAAGTCCGCCGTCGAGATCGAG-TGCGACTTCATCTCGGACGCGCTCCCCGTCGAG 933 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGAC 117355 || | || | || | | ||| ||| |||||| |||||||||| ||| Sbjct 934 CTCATTGGCATGAACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGAC 987 >seq8082 Length=462 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || ||||||||| |||| ||||| || | Sbjct 1 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCG 60 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| |||||||||||| | || || Sbjct 61 GACACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCA 119 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 120 ACAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 179 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||| |||| || || || ||| | ||| | | ||||||||| Sbjct 180 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 231 >seq7528 Length=2088 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| ||||||||| |||| ||||| || | Sbjct 229 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTCG 288 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| | || || | ||||| |||||||||||| | || || Sbjct 289 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| | ||| || | || || Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGG 455 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || ||||||||| | || ||||| || | Sbjct 913 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 972 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| | || || | ||||| |||||||||||| | || || Sbjct 973 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| | ||| || | || || Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || ||||||||| | || ||||| || | Sbjct 685 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTCG 744 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| | || || | ||||| |||||||||||| | || || Sbjct 745 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | ||| || | || ||| Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 912 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| |||||||| ||||||| || ||| | Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| | || || | ||||| |||||||| ||| | || || Sbjct 517 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 575 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 576 GCAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 635 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | ||| || | || ||| Sbjct 636 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 684 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| |||||||| |||| ||||| || | Sbjct 1 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACGCTCGATGTCGAGCCCTCG 60 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| | || || | ||||| |||||||||||| | || || Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || |||| ||||| |||| |||||||||| Sbjct 121 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGCGACTACAAC 180 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || ||| | ||| || | || ||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGC 228 >seq5348 Length=435 Score = 158 bits (174), Expect = 1e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || || ||||| || |||||||| || || |||||| |||| ||||| || | ||| Sbjct 52 CAGATCTTTGTAAAGACCCTCACGGGTAAGACTATCACCCTCGATGTCGAGCCCTCGGAC 111 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | |||| | ||| | || |||| ||||| |||||||||||| | || || || Sbjct 112 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 170 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || ||||||| ||| ||||| ||||| || |||| ||||| |||| ||| |||||||| Sbjct 171 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGATTACAACAT 230 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||| |||| ||||| || ||| | ||| Sbjct 231 CCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGC 264 >seq3754 Length=471 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| ||||| || | Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGATGTCGAGCCCTCG 60 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| | || || | ||||| |||||||||||| | || || Sbjct 61 GACACCATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 120 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| || | |||||| ||| Sbjct 121 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTATAAC 180 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || || || ||| | ||| Sbjct 181 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515149877256640