Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 158 1e-33
seq5348 145 7e-30
seq3754 140 3e-28
seq8082 122 8e-23
seq5216 98.7 9e-16
>seq7528
Length=2088
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| ||||| | | | ||||| ||||| || ||||| || || |||||||| ||||
Sbjct 457 TACCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 398
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| | ||||| ||||||||||| || |||||| |||| || ||||| ||||| || |
Sbjct 397 TGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGG 338
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| |||||||||||||| || || || || || | |||| |||||||| | |||||
Sbjct 337 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGA 278
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| |||| ||| | || |||||||| || || || ||||| |||||||||
Sbjct 277 CATCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 228
Score = 147 bits (162), Expect = 2e-30
Identities = 159/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| || ||||| || || |||||||| ||||| | ||||| |||||
Sbjct 1122 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 1063
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || |||||| ||||||||||||| ||||| || || ||||||||||||||
Sbjct 1062 GAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 1003
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | |||| |||||||| | |||||| || | ||| | || ||
Sbjct 1002 GATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTT 943
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || || |||||||||
Sbjct 942 CCCGGTGAGCGTCTTGACGAAGATCTGCATG 912
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| || ||||| || || |||||||| ||||| | ||||| || ||
Sbjct 210 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTC 151
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || || ||| | || |||||||| ||||| || || ||||||||||||||
Sbjct 150 GAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | |||| |||||||| | |||||| |||| || | || ||
Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTT 31
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || || ||||| ||||||||
Sbjct 30 GCCGGTGAGCGTCTTGACAAAGATCTGCAT 1
Score = 138 bits (152), Expect = 1e-27
Identities = 157/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| || ||||| || || |||||||| || || | ||||| || ||
Sbjct 894 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTC 835
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || |||||| ||||||||||||| ||||| || || ||||||||||||||
Sbjct 834 GAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 775
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | |||| |||||||| | |||||| || | ||| | || ||
Sbjct 774 GATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTT 715
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || || |||||||||
Sbjct 714 CCCGGTGAGCGTCTTGACGAAGATCTGCATG 684
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| || ||||| || || |||||||| || || | ||||| || ||
Sbjct 666 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTC 607
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || || ||| | || |||||||||||||| || || ||||||||||||||
Sbjct 606 GAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 547
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | |||| |||||| || ||| || |||| || | || ||
Sbjct 546 GATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGAGTGATGGTCTT 487
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || || || ||||| ||||||||
Sbjct 486 GCCGGTGAGCGTCTTGACAAAGATCTGCAT 457
>seq5348
Length=435
Score = 145 bits (160), Expect = 7e-30
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| ||||| | | | ||| | ||| | || ||||| || || ||||||||||||||
Sbjct 276 ACCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCT 217
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||||| ||||||||||| || || ||| ||||||| ||||| ||||| || ||
Sbjct 216 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGG 157
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|||||||||||||| ||| || || || || | |||| |||||||| | ||||||
Sbjct 156 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 97
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735
|||| ||| | || || || || || || |||||||| |||||
Sbjct 96 ATCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq3754
Length=471
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| || ||||| || || ||||| || ||||||| ||||| |||||
Sbjct 210 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTC 151
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || || ||| |||| || ||||| ||||| || || ||||||||||||||
Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | |||| |||||||| | |||||| |||| ||| | || ||
Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 31
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || || || ||||||||
Sbjct 30 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
>seq8082
Length=462
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||||| || ||||| || || |||||||| ||||| | ||||| |||||
Sbjct 210 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 151
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || || ||| |||| || ||||| ||||| || || ||||||||||||||
Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||||||| | |||||| |||| ||| | || ||
Sbjct 90 AATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 31
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || || ||||||||
Sbjct 30 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
>seq5216
Length=2424
Score = 98.7 bits (108), Expect = 9e-16
Identities = 199/293 (68%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 133077 TTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTC 133136
||||||||||| | |||||| |||| ||||| | | || || || ||| ||||
Sbjct 2135 TTGATCTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGGATGGCGCCAACGTTC 2076
Query 133137 TGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGA 133196
||||| || ||| ||||||| |||| |||||| | |||| || | | || |
Sbjct 2075 TGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGC 2016
Query 133197 TCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGT 133256
||| || | |||| || | |||||| || |||||||| ||||| |||||
Sbjct 2015 GAGATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGG 1956
Query 133257 CT-GAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGC 133315
| ||| || | || ||||| || || || | ||| ||||||||| |||||||
Sbjct 1955 CGCGAG-TACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGA 1897
Query 133316 CGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACT 133368
|||| |||||||||||| ||| |||| || ||||| | || |||| ||
Sbjct 1896 GGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCT 1844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433773487416688
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