Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq5348 100 3e-16
>seq5348
Length=435
Score = 100 bits (110), Expect = 3e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
|||| ||| |||||| || || |||||||| || || || |||| || ||||||
Sbjct 251 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGC 192
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
|| || ||||| ||||| ||||| || || | || | || |||||||||| || ||
Sbjct 191 TTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTC 132
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|| || | || | | ||||| | || ||||||| ||||| || || |||||
Sbjct 131 TGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTG 72
Query 43161 AGCGTCTTTACAAAGATTTG 43180
|| |||||||||||||| ||
Sbjct 71 AGGGTCTTTACAAAGATCTG 52
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571740661941920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |