Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7528 140 2e-28 seq3754 113 3e-20 seq8082 104 2e-17 seq5348 98.7 6e-16 >seq7528 Length=2088 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| |||||||||||| Sbjct 227 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| |||||||| || ||||| || || ||| Sbjct 167 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGATCAGGGGGG 108 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | || | || | || | | ||||| Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACA 48 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||||||||| || || |||||||||||||| Sbjct 47 TCGAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| ||||| | || || ||||| ||||||||||| Sbjct 683 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 624 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| |||||||| || |||||||| || ||| Sbjct 623 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGATCAGGGGGA 564 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | || | ||| | | || ||| Sbjct 563 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACG 504 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || |||||||||||||| Sbjct 503 TCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 457 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| |||||||||||| Sbjct 455 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 396 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| || || ||||| || || ||| Sbjct 395 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGG 336 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | || | || | | ||||| Sbjct 335 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 276 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || |||||||||||||| Sbjct 275 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 229 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | ||||| ||||| | || || ||||| |||||||||||| Sbjct 1140 TCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 1081 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| || | ||||||||| ||||| ||||| ||||| || || ||| Sbjct 1080 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGG 1021 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||||| | | | || | || | | ||||| Sbjct 1020 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 961 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || |||||||| || || || ||||||||||| Sbjct 960 ATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||| ||||| | || || ||||| ||||||||||| Sbjct 911 CCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 852 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| ||||| ||||| || || ||| Sbjct 851 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGG 792 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | || | || | | ||||| Sbjct 791 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 732 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || |||||||| || || || ||||||||||| Sbjct 731 TCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 685 >seq3754 Length=471 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||| |||||| |||| ||| |||| Sbjct 212 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCC 153 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||| || || ||| | || ||||||||| Sbjct 152 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 93 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | || | || | || | | ||||| || | ||||| || Sbjct 92 TGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTC 33 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||| ||||||||||| Sbjct 32 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq8082 Length=462 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||| ||||| | || || ||||| |||||||||||| Sbjct 227 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 168 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| || || ||||| || || ||| Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 108 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| || | | ||||| Sbjct 107 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 48 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || || || ||||||||||| Sbjct 47 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1 >seq5348 Length=435 Score = 98.7 bits (108), Expect = 6e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || || ||||| |||||||| ||| Sbjct 275 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTG 216 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| ||||| ||||| || || ||| Sbjct 215 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGG 156 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | || | || | | ||||| Sbjct 155 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 96 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 || | ||||| || || || ||||| || || ||||||||||| Sbjct 95 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323029617395840