Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 208 2e-48
seq3959 168 1e-36
>seq5216
Length=2424
Score = 208 bits (230), Expect = 2e-48
Identities = 668/1019 (66%), Gaps = 32/1019 (3%)
Strand=Plus/Plus
Query 248738 TCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTG 248797
||||||| || ||| || | |||| || |||| | | | ||| |||| || |
Sbjct 413 TCGCCGAGGATGTCTACGACATCATCATGGCCAACAAGGAGCGCCTCGACGCGGCCGTCA 472
Query 248798 ACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATC 248857
| |||| | || || |||||||| ||||| | ||||| ||||| ||| ||||| |
Sbjct 473 AGTACGACCGCGACTTCGAGTACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACC 532
Query 248858 TCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTG 248917
| ||||| |||| |||||||||| || || ||||||||| | ||||| || | |
Sbjct 533 TGCTCAAGGTTGACGGCAAGATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCG 592
Query 248918 TCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAAC 248977
|||| || |||||| | ||||| || ||| ||||||| ||| | |||| || |
Sbjct 593 TCGGCATCCACAAGCACGACATCGATCGCGCCATCGAGACCTACGAC---ATGA-TGT-C 647
Query 248978 GCTGGA-----TGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCA 249032
|| | | | || || ||||| ||||| |||||||||||||| ||| | | ||
Sbjct 648 GCAGAAGTTCTTCACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCA 707
Query 249033 GCTGAGCTCGTGCT--TTCTTCTTGC-CATGCAAGACGACTCTGTCGACGGCATTTATGA 249089
|| ||| ||| ||| || ||| |||| | |||||||| |||| ||||| | |
Sbjct 708 AATG---TCGAGCTGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCA 764
Query 249090 CACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCT 249148
||||| | || || || || || || | ||| ||||| ||||| || | ||
Sbjct 765 GACGCTCGAGACCTGCG-CGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCC 823
Query 249149 CCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTAT 249206
||||||||| || ||| ||| || || || || || |||| | || ||
Sbjct 824 ACAACATCCGCGCCTCGGGCAGCTACGTCGCCGGCACCAACGGC--CAGTCGAACGGCAT 881
Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC-- 249264
|| || | ||||| ||| | ||||||| | | | | |||||| ||| ||
Sbjct 882 TGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAA 941
Query 249265 -CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323
|| ||||| || ||||||||||| | || ||||||||||| | ||| ||| |
Sbjct 942 GCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCAT 1001
Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCT 249383
|| | |||||| ||||||| ||| | | || || ||||||||||||| |||
Sbjct 1002 TGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCT 1061
Query 249384 GTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTC 249443
|||||| ||||| | || |||| || ||| ||||| || || ||||| || | |
Sbjct 1062 CTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTG 1121
Query 249444 TCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAA 249503
||| ||| ||| || |||| ||| | |||||| ||| ||| | | ||| |
Sbjct 1122 CCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTCTACGA 1181
Query 249504 GAAATACGAATCCAACGGCATCG---GCAAGACAAT-CAAGGCTCGGACCCTTTTTGCGA 249559
| ||||| | ||| || ||||||| || | | | ||||| | | |
Sbjct 1182 GCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTAC-C 1240
Query 249560 AGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGC 249618
|| | || | |||||| ||||| || | ||||| | || | ||||| ||||| |||
Sbjct 1241 AGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCGT-TCATGCTCTTCAAGGACGCCTGC 1299
Query 249619 AACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAG 249678
||| |||| ||||| | | || || | |||| || || || || || | |||
Sbjct 1300 AACCGCAAGTCGAACCAGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAG 1359
Query 249679 GTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCT 249737
| || | |||||| || || ||| | |||||||||||||| || |||||| ||
Sbjct 1360 ATCATCGAGTACTCGGCCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCT 1418
>seq3959
Length=1071
Score = 168 bits (186), Expect = 1e-36
Identities = 285/401 (71%), Gaps = 19/401 (5%)
Strand=Plus/Plus
Query 253992 ACTGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACC 254051
|| ||| | || || || |||| ||| |||| || || || || ||||||||||| |||
Sbjct 166 ACGGGCAAGCTCCCGCACCTGCTCTTCTACGGCCCGCCGGGCACGGGCAAGACGTCCACC 225
Query 254052 ATCCTGGCGCTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCG 254109
||||| ||| ||||| || || |||||| | ||| | || | ||||| ||||
Sbjct 226 ATCCTCGCGGTGGCCAAGCAAATCT-TTGGGCCCGTAGAATACCGGA-ATCGCGTCCTCG 283
Query 254110 AGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTC- 254168
|||| ||||| || ||||| ||||| | ||| || ||||| ||| ||||| |||
Sbjct 284 AGCTCAACGCGTCCGACGAGCGCGGCATCTCCGTGGTGCGCGAAAAGGTCAAGGGCTTCG 343
Query 254169 --TCCAAGA-TGTCGATTTCGTCGTTC-CAAC--CCG---GCTGTCCGCCTTTCAAGCTC 254219
|||| || || | | || | | |||| | | |||| ||||| ||||| |||
Sbjct 344 CTTCCACGACCGTGGGCTCCGCCACGCTCAACGGCAGAAAGCTG-CCGCCCTTCAAACTC 402
Query 254220 GTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACG 254279
| ||||| |||||||| ||| ||||| | | ||||||||| ||| |||||||| ||
Sbjct 403 ATCATCCTCGACGAGGCAGACTCCATGTCCGAGGACGCGCAGAGCGCGCTCCGCCGCACC 462
Query 254280 ATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGA 254337
|||||| | || | |||||||| || ||||| ||||| |||||||| | || |
Sbjct 463 ATGGAGCTGTACACGCGCGTGACGCGCTTCTGCCTCGTGTGTAACTACGTCAGCCG--CA 520
Query 254338 TCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378
|||||| ||||| || || || ||||| ||||| || |||
Sbjct 521 TCATCGAGCCGCTCGCCTCGCGCTGCGCAAAGTTCCGCTTC 561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073618312849152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |