Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5216 208 2e-48 seq3959 168 1e-36 >seq5216 Length=2424 Score = 208 bits (230), Expect = 2e-48 Identities = 668/1019 (66%), Gaps = 32/1019 (3%) Strand=Plus/Plus Query 248738 TCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTG 248797 ||||||| || ||| || | |||| || |||| | | | ||| |||| || | Sbjct 413 TCGCCGAGGATGTCTACGACATCATCATGGCCAACAAGGAGCGCCTCGACGCGGCCGTCA 472 Query 248798 ACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATC 248857 | |||| | || || |||||||| ||||| | ||||| ||||| ||| ||||| | Sbjct 473 AGTACGACCGCGACTTCGAGTACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACC 532 Query 248858 TCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTG 248917 | ||||| |||| |||||||||| || || ||||||||| | ||||| || | | Sbjct 533 TGCTCAAGGTTGACGGCAAGATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCG 592 Query 248918 TCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAAC 248977 |||| || |||||| | ||||| || ||| ||||||| ||| | |||| || | Sbjct 593 TCGGCATCCACAAGCACGACATCGATCGCGCCATCGAGACCTACGAC---ATGA-TGT-C 647 Query 248978 GCTGGA-----TGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCA 249032 || | | | || || ||||| ||||| |||||||||||||| ||| | | || Sbjct 648 GCAGAAGTTCTTCACGCACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCA 707 Query 249033 GCTGAGCTCGTGCT--TTCTTCTTGC-CATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 || ||| ||| ||| || ||| |||| | |||||||| |||| ||||| | | Sbjct 708 AATG---TCGAGCTGCTTCCTCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCA 764 Query 249090 CACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCT 249148 ||||| | || || || || || || | ||| ||||| ||||| || | || Sbjct 765 GACGCTCGAGACCTGCG-CGCGCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCC 823 Query 249149 CCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTAT 249206 ||||||||| || ||| ||| || || || || || |||| | || || Sbjct 824 ACAACATCCGCGCCTCGGGCAGCTACGTCGCCGGCACCAACGGC--CAGTCGAACGGCAT 881 Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC-- 249264 || || | ||||| ||| | ||||||| | | | | |||||| ||| || Sbjct 882 TGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAA 941 Query 249265 -CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323 || ||||| || ||||||||||| | || ||||||||||| | ||| ||| | Sbjct 942 GCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCAT 1001 Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCT 249383 || | |||||| ||||||| ||| | | || || ||||||||||||| ||| Sbjct 1002 TGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCT 1061 Query 249384 GTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTC 249443 |||||| ||||| | || |||| || ||| ||||| || || ||||| || | | Sbjct 1062 CTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTG 1121 Query 249444 TCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAA 249503 ||| ||| ||| || |||| ||| | |||||| ||| ||| | | ||| | Sbjct 1122 CCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTCTACGA 1181 Query 249504 GAAATACGAATCCAACGGCATCG---GCAAGACAAT-CAAGGCTCGGACCCTTTTTGCGA 249559 | ||||| | ||| || ||||||| || | | | ||||| | | | Sbjct 1182 GCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTAC-C 1240 Query 249560 AGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGC 249618 || | || | |||||| ||||| || | ||||| | || | ||||| ||||| ||| Sbjct 1241 AGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCGT-TCATGCTCTTCAAGGACGCCTGC 1299 Query 249619 AACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAG 249678 ||| |||| ||||| | | || || | |||| || || || || || | ||| Sbjct 1300 AACCGCAAGTCGAACCAGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAG 1359 Query 249679 GTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCT 249737 | || | |||||| || || ||| | |||||||||||||| || |||||| || Sbjct 1360 ATCATCGAGTACTCGGCCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCT 1418 >seq3959 Length=1071 Score = 168 bits (186), Expect = 1e-36 Identities = 285/401 (71%), Gaps = 19/401 (5%) Strand=Plus/Plus Query 253992 ACTGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACC 254051 || ||| | || || || |||| ||| |||| || || || || ||||||||||| ||| Sbjct 166 ACGGGCAAGCTCCCGCACCTGCTCTTCTACGGCCCGCCGGGCACGGGCAAGACGTCCACC 225 Query 254052 ATCCTGGCGCTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCG 254109 ||||| ||| ||||| || || |||||| | ||| | || | ||||| |||| Sbjct 226 ATCCTCGCGGTGGCCAAGCAAATCT-TTGGGCCCGTAGAATACCGGA-ATCGCGTCCTCG 283 Query 254110 AGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTC- 254168 |||| ||||| || ||||| ||||| | ||| || ||||| ||| ||||| ||| Sbjct 284 AGCTCAACGCGTCCGACGAGCGCGGCATCTCCGTGGTGCGCGAAAAGGTCAAGGGCTTCG 343 Query 254169 --TCCAAGA-TGTCGATTTCGTCGTTC-CAAC--CCG---GCTGTCCGCCTTTCAAGCTC 254219 |||| || || | | || | | |||| | | |||| ||||| ||||| ||| Sbjct 344 CTTCCACGACCGTGGGCTCCGCCACGCTCAACGGCAGAAAGCTG-CCGCCCTTCAAACTC 402 Query 254220 GTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACG 254279 | ||||| |||||||| ||| ||||| | | ||||||||| ||| |||||||| || Sbjct 403 ATCATCCTCGACGAGGCAGACTCCATGTCCGAGGACGCGCAGAGCGCGCTCCGCCGCACC 462 Query 254280 ATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGA 254337 |||||| | || | |||||||| || ||||| ||||| |||||||| | || | Sbjct 463 ATGGAGCTGTACACGCGCGTGACGCGCTTCTGCCTCGTGTGTAACTACGTCAGCCG--CA 520 Query 254338 TCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 |||||| ||||| || || || ||||| ||||| || ||| Sbjct 521 TCATCGAGCCGCTCGCCTCGCGCTGCGCAAAGTTCCGCTTC 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073618312849152