Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5216 237 1e-57 seq236 154 1e-32 seq7528 109 5e-19 >seq5216 Length=2424 Score = 237 bits (262), Expect = 1e-57 Identities = 624/942 (66%), Gaps = 8/942 (1%) Strand=Plus/Minus Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 ||| ||||| || ||||| ||||| |||||||| || || |||||| | || ||||| Sbjct 1413 GATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGT 1354 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || || || |||| || |||| | || ||||||| || || ||||| | Sbjct 1353 GCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 1294 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA-CTCGATGATCGCTCGCC 23201 |||||| |||||||| ||||| ||| ||||||| ||| | ||| | |||| || Sbjct 1293 GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTC-AGGATCTGGTACC 1235 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | | ||| ||| | | ||| || | | ||| || | |||||| | ||| Sbjct 1234 AGAGGTCCTGGGCGCGCATG-GTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAG 1176 Query 23261 AACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | | | | || ||| | ||||| ||| || | ||||| | | |||| || | Sbjct 1175 AGCTCCTTGAACTCGTCGCCGTAGACA-TCCGAGAGGCCCTTGGCCTCGTTCGGGCAGAA 1117 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| |||| | || || || || ||||||||| || || | ||| || || Sbjct 1116 GAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGC 1057 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| || ||||||||||| |||||||| |||||| |||||| | || | || Sbjct 1056 GTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAA 997 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 |||| ||||| || ||||| ||||||||||| | ||| || | |||| | ||| Sbjct 996 GTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCC 937 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||||||||| || ||||| ||||| |||| |||| | || | ||||| ||||| | || Sbjct 936 GCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCC 877 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||| ||| |||| ||| || || || || || | |||||| | || Sbjct 876 GTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTT 817 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTC-AGAGTGTCGTAGA 23678 || || ||||| ||| | | || || || |||||| || || || || | | ||| Sbjct 816 GACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCA-GGTCTCGAGCGTCTGGAAGA 758 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||||||||| ||| || || | || | ||| || |||||||||| || Sbjct 757 TGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGG 698 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | || |||| ||| || ||||| |||||||||| ||| | | |||||| | | Sbjct 697 GGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGT 638 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 ||| || ||||||||| ||| ||||| | ||| || |||| || ||||||||| | Sbjct 637 CGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGA 578 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||||| || || | |||| | | ||||| || |||| ||| || || || | | Sbjct 577 GCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGA 518 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 ||| || || || || |||| || | ||||| || |||| Sbjct 517 GCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGT 476 >seq236 Length=1170 Score = 154 bits (170), Expect = 1e-32 Identities = 376/565 (67%), Gaps = 10/565 (2%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| || ||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 265 GACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGATGGAC 324 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA--ATCTGAGAGAA--ATTTTAT 57682 ||| |||| | || || | || ||||| || | | ||| | | ||| | Sbjct 325 CTGGGCCAGGACCAGAAGGACTTTGA----CTCAATGACCAAGGGCGAGCAGCACTTTGT 380 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || ||||| |||| || ||||| | || || || || || |||||| | ||||| Sbjct 381 CAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTCGA 440 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | |||| || ||| || | ||||| | ||||| ||||| || || |||| Sbjct 441 GAACTTTTGCAGCGAGGTGAGCCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATGGC 500 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 ||| || ||| | || || || |||| ||||| || ||||| || ||| | |||| Sbjct 501 CATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATCGACACCTACATTCGCGACAG 560 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGG 57921 | ||||| | || |||||||| |||| || ||||| ||| |||||| |||| Sbjct 561 CAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCTGCCCTGCGTGCGCCAA-AAGG 619 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | ||||| | || | || | || || ||| || |||||| | || ||| Sbjct 620 CGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCCGAGCGCCTCGTCG 679 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 || || |||||||| || || ||||| |||||| |||| || || || ||| | | Sbjct 680 GTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCA 739 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| |||||||| ||||| || || || || ||| ||| |||| |||||||||| Sbjct 740 AGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGG 799 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 | | || || || ||||| ||||| Sbjct 800 GCATGCACACCGACTTTGCTTGCCT 824 >seq7528 Length=2088 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || |||||| |||| || || || || Sbjct 228 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTCGATGTCGAGCCCTC 287 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || |||| || ||||||||| ||| | || || || || Sbjct 288 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 347 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||||||||| ||| | || ||| || | ||||| || || Sbjct 348 ACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 407 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || ||||| || | ||| | || |||| Sbjct 408 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGCGGTGGTA 457 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || || || Sbjct 912 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 971 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || |||| || ||||||||| ||| | || || || || Sbjct 972 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| | || ||| || | ||||| || || Sbjct 1032 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 1091 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || || || ||| | ||| | || || Sbjct 1092 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 1139 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || ||||| |||||||||| || | Sbjct 457 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTCGACGTTGAGCCCAGC 516 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || |||| || ||||||||| ||| | || || || ||| Sbjct 517 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 576 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | |||||| || | || || || ||| Sbjct 577 CAGCGTCTTATTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAAC 636 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || || || || Sbjct 637 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 668 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || || || Sbjct 684 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGATGTCGAGCCCTC 743 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || |||| || ||||||||| ||| | || || || || Sbjct 744 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 803 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| | |||||| || | || || || || Sbjct 804 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGACGGCCGCACGCTCAGTGACTACAA 863 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || || || || Sbjct 864 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706422130880