Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7460 176 4e-39 >seq7460 Length=1425 Score = 176 bits (194), Expect = 4e-39 Identities = 392/583 (67%), Gaps = 4/583 (1%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 ||||| || |||||||| ||||||| |||| ||| || | | ||| | || || || Sbjct 1277 AGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCG 1218 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 | | |||||| ||| | |||| ||||| ||| || || ||||| ||| ||||| Sbjct 1217 GCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTG 1158 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || ||||| |||||| | |||| |||||||| ||||| || ||||| ||| Sbjct 1157 AAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCC 1098 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 | |||||||||||| || | ||| || || || || ||||| | || || Sbjct 1097 TTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCC 1038 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGGGCCGCCTGTTAATTAGATC 21223 || |||||||| || | | | ||||| || | ||| ||| | | || || | Sbjct 1037 GCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG-TTCGTTTTGATGGTGTG 979 Query 21224 CACCACGTAACGC-AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 || || | ||| |||||||| || ||||| || |||| | | ||| | ||| Sbjct 978 CA-CAAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGT 920 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGC 21342 |||| || ||||| || | ||||||||| ||||| || || || ||||||||||| || Sbjct 919 ACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGC 860 Query 21343 GGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402 | ||| || ||| | | | | ||||||||||||| |||||||||| | | Sbjct 859 GATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAA 800 Query 21403 CGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462 | | | ||| ||| | |||| |||| ||| ||||| |||| |||| Sbjct 799 TGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCT 740 Query 21463 CCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGG 21505 | ||||||| | |||||| || | ||||| || | ||| || Sbjct 739 CGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427719881670720