Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq7460 176 4e-39
>seq7460
Length=1425
Score = 176 bits (194), Expect = 4e-39
Identities = 392/583 (67%), Gaps = 4/583 (1%)
Strand=Plus/Minus
Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984
||||| || |||||||| ||||||| |||| ||| || | | ||| | || || ||
Sbjct 1277 AGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCG 1218
Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044
| | |||||| ||| | |||| ||||| ||| || || ||||| ||| |||||
Sbjct 1217 GCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTG 1158
Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104
|| || || || ||||| |||||| | |||| |||||||| ||||| || ||||| |||
Sbjct 1157 AAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCC 1098
Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164
| |||||||||||| || | ||| || || || || ||||| | || ||
Sbjct 1097 TTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCC 1038
Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGGGCCGCCTGTTAATTAGATC 21223
|| |||||||| || | | | ||||| || | ||| ||| | | || || |
Sbjct 1037 GCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG-TTCGTTTTGATGGTGTG 979
Query 21224 CACCACGTAACGC-AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282
|| || | ||| |||||||| || ||||| || |||| | | ||| | |||
Sbjct 978 CA-CAAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGT 920
Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGC 21342
|||| || ||||| || | ||||||||| ||||| || || || ||||||||||| ||
Sbjct 919 ACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGC 860
Query 21343 GGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402
| ||| || ||| | | | | ||||||||||||| |||||||||| | |
Sbjct 859 GATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAA 800
Query 21403 CGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462
| | | ||| ||| | |||| |||| ||| ||||| |||| ||||
Sbjct 799 TGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCT 740
Query 21463 CCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGG 21505
| ||||||| | |||||| || | ||||| || | ||| ||
Sbjct 739 CGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427719881670720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |