Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1800 86.0 4e-12 seq236 84.2 2e-11 >seq1800 Length=3705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 33523 GCCGATGGGTGCAAATGCGTCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGC 33582 ||||| || | ||| | ||||||| ||||| |||| | | || |||| ||| Sbjct 2905 GCCGACGGCTTCAAGTTCGTCAAGGTCAAGTACCGCACCGTGATGGTGCCGCAGATCGGC 2964 Query 33583 GACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTA---CGACCA 33638 |||||||| || ||| ||||| || |||||||| || ||||||| || || ||| Sbjct 2965 GACAAGTTCGCCTCGCGCCACGG-ACAAAAGGGCACCTGTGGCATGACCTATGGCGCCCA 3023 Query 33639 GTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGC 33698 || |||||||||||| |||||||| ||||||| | || ||||||||||||| Sbjct 3024 ---CGATATGCCGTTCACGCAGGACGGCGTCAACCCGGACATTATCGTCAACCCGCATGC 3080 Query 33699 GTTCCCCTCGCGCATGAC 33716 | ||| |||||||| Sbjct 3081 TATTCCCAGTCGCATGAC 3098 >seq236 Length=1170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22753 TTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAG 22812 |||||||| || || ||| || | || || || || ||| ||||| |||||||| ||| Sbjct 682 TTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAG 741 Query 22813 AAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGT 22872 || || |||||||| || | | || ||||| ||| |||| ||||| ||||| || Sbjct 742 AAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGC 801 Query 22873 CTACACTGTGACTTTGCTTGTATGCTGTT 22901 | ||| ||||||||||| |||| || Sbjct 802 ATGCACACCGACTTTGCTTGCCTGCTCTT 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356186867049892