Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq236 178 2e-39 seq5216 98.7 1e-15 >seq236 Length=1170 Score = 178 bits (196), Expect = 2e-39 Identities = 588/885 (66%), Gaps = 37/885 (4%) Strand=Plus/Plus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| | | || ||||| ||||| ||||| ||||| ||||||| || ||| Sbjct 247 TTCCCGATCCAGCACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGG 306 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||| | || ||| | |||||| | | || | || ||| | ||| | Sbjct 307 ACGGCCGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGA--CTCAAT-GACCAAG 363 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| | ||| | |||| | |||||||||| || ||| || || ||||| Sbjct 364 GGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTG 423 Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG-TGC 125234 ||| || | || || | | | | || ||| ||| | | || |||| ||| ||| Sbjct 424 CTCGAGAACGTCGTCGAGA--ACTTTTGCAGCGAGGTGAGCCTGCCCGAGGC-TCGCTGC 480 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| || || |||||| | ||||| || ||||||| || || Sbjct 481 TTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATC 540 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| ||||||||||| | ||| | || | || |||| ||||| |||||||| | Sbjct 541 GACACCTACATTCGCGA-CAGCAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCT 599 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||| | | || ||||||| || |||| || || | || || | | ||| | | Sbjct 600 GCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCAC 659 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTT 125472 | ||||| | || || | || || ||||| |||||||||||||| ||||| | || Sbjct 660 CTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 719 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| |||||||| ||||||||||||||||| |||||||| || || || | || | Sbjct 720 TTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA-C 125591 || | || || ||||||||| | ||| |||||||| || || || ||||| | Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTCCGCAAGC 838 Query 125592 T-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | ||| | || || | || || ||| | || ||||||| || || || Sbjct 839 TCATCAACCCGCCCAGCG-AG-GCCCGCGTGCACGAGATCATCAA----GT--CC---GC 887 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGA 125709 ||| ||| || || || | | || | || || ||| ||| | |||||||||| Sbjct 888 CGTCGAGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGC-TCATTGGCATGA 946 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||| || || ||| ||||||| |||| || || || || || | | || Sbjct 947 ACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGT---CAAGGCTC 1003 Query 125770 TTGGCCGCAAG---ATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCA 125825 | ||| ||||| || ||| || |||| |||||||| | || |||| | || || Sbjct 1004 TCGGCTGCAAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTG-ATCTCC 1062 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||||||||| ||| ||| |||||||| Sbjct 1063 ATGCAGGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTAC 1107 >seq5216 Length=2424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 310/475 (65%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | ||| | || ||||||||||| ||||| ||||| || ||| | ||||| ||| Sbjct 958 GCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAAC 1017 Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025 ||| || |||| || ||| | ||| | || || || |||||||| || || | Sbjct 1018 CACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTT 1077 Query 97026 TTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCC 97085 || ||| |||| ||| | | | || ||||| ||| | ||||| || | | Sbjct 1078 TTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAG 1137 Query 97086 GGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG 97145 || || || ||| || ||||| ||||| ||| ||| | ||||||| | ||| Sbjct 1138 GGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAG 1197 Query 97146 GGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGA-CGGCTC 97203 ||||| || |||| | || || | || || ||| | ||| ||| | || | Sbjct 1198 GGCCGCGGCCGCAAGACCATGCG-CGCCCAGGACCTCTGGTACCAGATCCTGAGCTGC-C 1255 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || |||| ||| |||| |||||| || || ||||| |||| Sbjct 1256 AGATCGAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACC 1315 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCT 97323 | || | |||| ||||||| ||| || |||||||| || || | |||||| | Sbjct 1316 AGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 1375 Query 97324 CTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | || |||||| || || ||| || || || |||| |||| |||||| || Sbjct 1376 CCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT 1430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740959490484640