Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq236 178 2e-39
seq5216 98.7 1e-15
>seq236
Length=1170
Score = 178 bits (196), Expect = 2e-39
Identities = 588/885 (66%), Gaps = 37/885 (4%)
Strand=Plus/Plus
Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| ||| | | || ||||| ||||| ||||| ||||| ||||||| || |||
Sbjct 247 TTCCCGATCCAGCACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGG 306
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|||| ||| ||| | || ||| | |||||| | | || | || ||| | ||| |
Sbjct 307 ACGGCCGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGA--CTCAAT-GACCAAG 363
Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177
|||| | ||| | |||| | |||||||||| || ||| || || |||||
Sbjct 364 GGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTG 423
Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG-TGC 125234
||| || | || || | | | | || ||| ||| | | || |||| ||| |||
Sbjct 424 CTCGAGAACGTCGTCGAGA--ACTTTTGCAGCGAGGTGAGCCTGCCCGAGGC-TCGCTGC 480
Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294
|| ||||| ||||| || || |||||| | ||||| || ||||||| || ||
Sbjct 481 TTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATC 540
Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353
|||| ||||||||||| | ||| | || | || |||| ||||| |||||||| |
Sbjct 541 GACACCTACATTCGCGA-CAGCAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCT 599
Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413
||| | | || ||||||| || |||| || || | || || | | ||| | |
Sbjct 600 GCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCAC 659
Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTT 125472
| ||||| | || || | || || ||||| |||||||||||||| ||||| | ||
Sbjct 660 CTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 719
Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532
|||| |||||||| ||||||||||||||||| |||||||| || || || | || |
Sbjct 720 TTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 778
Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA-C 125591
|| | || || ||||||||| | ||| |||||||| || || || ||||| |
Sbjct 779 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTCCGCAAGC 838
Query 125592 T-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650
| ||| | || || | || || ||| | || ||||||| || || ||
Sbjct 839 TCATCAACCCGCCCAGCG-AG-GCCCGCGTGCACGAGATCATCAA----GT--CC---GC 887
Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGA 125709
||| ||| || || || | | || | || || ||| ||| | ||||||||||
Sbjct 888 CGTCGAGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGC-TCATTGGCATGA 946
Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769
||| || || ||| ||||||| |||| || || || || || | | ||
Sbjct 947 ACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGT---CAAGGCTC 1003
Query 125770 TTGGCCGCAAG---ATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCA 125825
| ||| ||||| || ||| || |||| |||||||| | || |||| | || ||
Sbjct 1004 TCGGCTGCAAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTG-ATCTCC 1062
Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
| |||| ||||||||||||||||| ||| ||| ||||||||
Sbjct 1063 ATGCAGGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTAC 1107
>seq5216
Length=2424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 310/475 (65%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965
||| | ||| | || ||||||||||| ||||| ||||| || ||| | ||||| |||
Sbjct 958 GCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAAC 1017
Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025
||| || |||| || ||| | ||| | || || || |||||||| || || |
Sbjct 1018 CACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTT 1077
Query 97026 TTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCC 97085
|| ||| |||| ||| | | | || ||||| ||| | ||||| || | |
Sbjct 1078 TTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAG 1137
Query 97086 GGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG 97145
|| || || ||| || ||||| ||||| ||| ||| | ||||||| | |||
Sbjct 1138 GGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAG 1197
Query 97146 GGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGA-CGGCTC 97203
||||| || |||| | || || | || || ||| | ||| ||| | || |
Sbjct 1198 GGCCGCGGCCGCAAGACCATGCG-CGCCCAGGACCTCTGGTACCAGATCCTGAGCTGC-C 1255
Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263
|| | ||||| || |||| ||| |||| |||||| || || ||||| ||||
Sbjct 1256 AGATCGAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACC 1315
Query 97264 AACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCT 97323
| || | |||| ||||||| ||| || |||||||| || || | |||||| |
Sbjct 1316 AGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 1375
Query 97324 CTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378
| || |||||| || || ||| || || || |||| |||| |||||| ||
Sbjct 1376 CCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT 1430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740959490484640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |