Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq7528 102 2e-16
seq3754 98.7 2e-15
seq5348 96.9 8e-15
seq8082 89.7 1e-12
>seq7528
Length=2088
Score = 102 bits (112), Expect = 2e-16
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || | |||||||| || || || ||
Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCG 138
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481
|| ||||| || | |||||||||||| || || || || || ||||| ||||| ||| ||
Sbjct 137 GCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 79
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | ||| || || || || || || || || ||||| || || || ||
Sbjct 78 CACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTTGCCGGTGAGCGT 19
Query 104542 TTTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 18 CTTGACAAAGATCTGCAT 1
Score = 98.7 bits (108), Expect = 2e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || |||||| || || | |||||||| || || || |||
Sbjct 881 GTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCA 822
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481
|| || || || | |||||||||||| || || || || || ||||| ||||| ||| ||
Sbjct 821 GCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 763
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || || || || || || || || ||||| || || || ||
Sbjct 762 CACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGT 703
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 702 CTTGACGAAGATCTGCAT 685
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || | ||||| || || || || |||
Sbjct 425 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 366
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481
|| || || || | |||||||||||| || || || || || ||||| ||||| ||| ||
Sbjct 365 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 307
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || || || || || || || || ||||| || || || ||
Sbjct 306 CACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCGGTGAGCGT 247
Query 104542 TTTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 246 CTTGACAAAGATCTGCAT 229
Score = 91.5 bits (100), Expect = 3e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || ||||| || || | |||||
Sbjct 1125 AAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 1066
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || ||||| || || || | |||||||||||| || || || || || ||
Sbjct 1065 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTC 1006
Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||| ||||| ||| || || || || | ||| || || || || || || || || |
Sbjct 1005 CTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGG 947
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || || || || || ||||||||
Sbjct 946 TCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913
>seq3754
Length=471
Score = 98.7 bits (108), Expect = 2e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || |||||||| || || | ||||| || || || || ||
Sbjct 197 GTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 138
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481
|| || || || | |||||||||||| || || || || || ||||| ||||| ||| ||
Sbjct 137 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 79
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | ||| || || || || || || || |||||||| || || || ||
Sbjct 78 CACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTGCCCGTGAGGGT 19
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 18 CTTCACGAAGATCTGCAT 1
>seq5348
Length=435
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || | ||||| || || || || ||
Sbjct 245 GTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 186
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481
|| || || || | |||||||||||| || || || || || ||||||||||| |||||
Sbjct 185 GCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 126
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || || || || || || || ||||||||||| || || ||
Sbjct 125 -ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTGAGGGT 67
Query 104542 TTTTACAAATATCTG 104556
|||||||| |||||
Sbjct 66 CTTTACAAAGATCTG 52
>seq8082
Length=462
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || | ||||| || || || || ||
Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 138
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | |||||||||||| || || || || || ||||||||||| | ||
Sbjct 137 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 78
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || || || || || || || |||||||| || || ||
Sbjct 77 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 18
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 17 TTGACGAAGATCTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151239606328912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |