Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7528 102 2e-16 seq3754 98.7 2e-15 seq5348 96.9 8e-15 seq8082 89.7 1e-12 >seq7528 Length=2088 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | |||||||| || || || || Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCG 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || ||||| || | |||||||||||| || || || || || ||||| ||||| ||| || Sbjct 137 GCGAAAATAAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 79 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || || || || || || || ||||| || || || || Sbjct 78 CACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGCGTGATGGTCTTGCCGGTGAGCGT 19 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 18 CTTGACAAAGATCTGCAT 1 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||| || || | |||||||| || || || ||| Sbjct 881 GTGGACTCCTTCTGGATGTTGTAGTCACTGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCA 822 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | |||||||||||| || || || || || ||||| ||||| ||| || Sbjct 821 GCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 763 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || || || || || || || ||||| || || || || Sbjct 762 CACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGGTCTTCCCGGTGAGCGT 703 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 702 CTTGACGAAGATCTGCAT 685 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||||| || || || || ||| Sbjct 425 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 366 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | |||||||||||| || || || || || ||||| ||||| ||| || Sbjct 365 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 307 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || || || || || || || ||||| || || || || Sbjct 306 CACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCGGTGAGCGT 247 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 246 CTTGACAAAGATCTGCAT 229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || || | ||||| Sbjct 1125 AAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 1066 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | |||||||||||| || || || || || || Sbjct 1065 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTC 1006 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||| ||||| ||| || || || || | ||| || || || || || || || || | Sbjct 1005 CTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCAAGGGTGATGG 947 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 946 TCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 913 >seq3754 Length=471 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| || || | ||||| || || || || || Sbjct 197 GTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | |||||||||||| || || || || || ||||| ||||| ||| || Sbjct 137 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 79 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || || || || || || |||||||| || || || || Sbjct 78 CACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTGCCCGTGAGGGT 19 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 18 CTTCACGAAGATCTGCAT 1 >seq5348 Length=435 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || | ||||| || || || || || Sbjct 245 GTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 186 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | |||||||||||| || || || || || ||||||||||| ||||| Sbjct 185 GCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 126 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || || || || || || ||||||||||| || || || Sbjct 125 -ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTTACCCGTGAGGGT 67 Query 104542 TTTTACAAATATCTG 104556 |||||||| ||||| Sbjct 66 CTTTACAAAGATCTG 52 >seq8082 Length=462 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||||| || || || || || Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||||||||| || || || || || ||||||||||| | || Sbjct 137 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 78 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || || || || || || |||||||| || || || Sbjct 77 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 18 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 17 TTGACGAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151239606328912