Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq8122 122 7e-23 >seq8122 Length=2121 Score = 122 bits (134), Expect = 7e-23 Identities = 209/299 (70%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 5594 AGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGC 5653 |||||||| || | |||||| ||| || |||| | | || |||| |||||| ||| Sbjct 1745 AGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGTGGTTGAAGAGC 1686 Query 5654 ACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAG 5713 || ||||| ||||| |||||||||||| ||| || ||||||||||| ||||||||| Sbjct 1685 ACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGACGTCGATGTGC 1626 Query 5714 TGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGT 5773 | ||| ||| || || || || || ||||||||||||||| || |||| | ||| Sbjct 1625 TTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCGCGGGGACCTGG 1566 Query 5774 ATCTGCAGGTC---CGTGAACA-CCACTCGCCGACCGCCCGCAGGGACGATGCAGTCGCA 5829 | || ||| | ||| | || || |||| | ||| |||| || | | || Sbjct 1565 ACGGCCACGTCGGTCTTGACGAGCCCCTTGCCGGCGGCC----GGGATGA--CCGCATCA 1512 Query 5830 AGCGCTGC--AGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGGGGAGCGTGGC 5886 |||| || | |||||| ||||||||| || |||||| | ||| || | ||| || Sbjct 1511 TGCGCCGCGTACAGGTCGAGGCCGGCCGCCTCCGCGGACCCGCGGGTCGGCACCGTCGC 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429997982775968