Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq8122 122 7e-23
>seq8122
Length=2121
Score = 122 bits (134), Expect = 7e-23
Identities = 209/299 (70%), Gaps = 12/299 (4%)
Strand=Plus/Minus
Query 5594 AGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGC 5653
|||||||| || | |||||| ||| || |||| | | || |||| |||||| |||
Sbjct 1745 AGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGTGGTTGAAGAGC 1686
Query 5654 ACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAG 5713
|| ||||| ||||| |||||||||||| ||| || ||||||||||| |||||||||
Sbjct 1685 ACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGACGTCGATGTGC 1626
Query 5714 TGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGT 5773
| ||| ||| || || || || || ||||||||||||||| || |||| | |||
Sbjct 1625 TTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCGCGGGGACCTGG 1566
Query 5774 ATCTGCAGGTC---CGTGAACA-CCACTCGCCGACCGCCCGCAGGGACGATGCAGTCGCA 5829
| || ||| | ||| | || || |||| | ||| |||| || | | ||
Sbjct 1565 ACGGCCACGTCGGTCTTGACGAGCCCCTTGCCGGCGGCC----GGGATGA--CCGCATCA 1512
Query 5830 AGCGCTGC--AGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGGGGAGCGTGGC 5886
|||| || | |||||| ||||||||| || |||||| | ||| || | ||| ||
Sbjct 1511 TGCGCCGCGTACAGGTCGAGGCCGGCCGCCTCCGCGGACCCGCGGGTCGGCACCGTCGC 1453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429997982775968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |