Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq8122 102 6e-17 >seq8122 Length=2121 Score = 102 bits (112), Expect = 6e-17 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 40723 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAAGGG--TCGCACCC 40780 |||||||||||||||| || ||||||||||| || || || |||| ||| || Sbjct 1756 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGA--CGTCGAGGGCCTCGTCGCC 1699 Query 40781 AAAGTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACC 40840 ||| || | | |||||||| ||| || | ||||||| |||| | || || || || Sbjct 1698 GTGGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCC 1639 Query 40841 GACGTCTATAAAATT-TTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGC 40899 |||||| || || ||||| || || || |||| || ||||| | ||||||| || Sbjct 1638 GACGTCGATGTGCTTCTTCCA-CGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGC 1580 Query 40900 CCGGGGGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCCCTGCC 40945 ||| ||| | || ||||||| ||| ||||| || || || |||| Sbjct 1579 CCGCGGGGACCTGGACGGCCACGTCGGTCTTGACGAGCCCCTTGCC 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340092978623772