Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq8082 86.0 6e-12
seq7528 86.0 6e-12
seq5348 86.0 6e-12
seq3754 86.0 6e-12
>seq8082
Length=462
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| | ||| | || || ||||| || | ||| || ||||| | ||| | |||||
Sbjct 210 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 151
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || ||| | ||||| | | || ||||| || || || || || ||||| |
Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || | ||| ||| ||| ||||| | | | ||||| || | |||||||| ||
Sbjct 90 AATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 31
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||
Sbjct 30 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 1
>seq7528
Length=2088
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | || || ||||| || | ||| || ||||| | ||| | |||||
Sbjct 438 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 379
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || | ||||| | | || ||||| || || || || || ||||| |
Sbjct 378 GAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 319
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||| ||| ||| ||||| | | | ||||| || | |||||||| ||
Sbjct 318 GATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 259
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || ||||||||||||||||
Sbjct 258 GCCGGTGAGCGTCTTGACAAAGATCTGCATGC 227
Score = 82.4 bits (90), Expect = 7e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| ||| || | || || | ||| | ||| | || || ||||| || | ||| || ||
Sbjct 1143 CAGTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1084
Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
||| | ||| | ||||| ||||| || || | ||||| | | || ||||| ||
Sbjct 1083 GCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGATCAGG 1024
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956
|| || || || ||||| | || || ||| ||| ||| ||||| | | | ||
Sbjct 1023 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTC 964
Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||| |||| |||||||| || || || || || || || |||||||||||||
Sbjct 963 GACATCAAGGGTGATGGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATGC 911
>seq5348
Length=435
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| | ||||| || || ||||| || | ||| |||||||| | ||| | |||||
Sbjct 258 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTGAGCGTGCGGCCGTCCTC 199
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || ||| | ||||| | | || ||||| || || || || || ||||| |
Sbjct 198 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 139
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || ||| ||| ||| ||||| | | | ||||| || | ||||| || ||
Sbjct 138 AATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 79
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTG 95004
|| || || || || |||||||||||
Sbjct 78 ACCCGTGAGGGTCTTTACAAAGATCTG 52
>seq3754
Length=471
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | || || ||||| || | |||||| ||||||| ||| | |||||
Sbjct 210 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCCTC 151
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || ||| | ||||| | | || ||||| || || || || || ||||| |
Sbjct 150 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 91
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||| || ||| ||||| | | | ||||| || | ||||| || ||
Sbjct 90 GATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTT 31
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| |||||||||||
Sbjct 30 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448230882419040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |