Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3953 118 2e-22 >seq3953 Length=312 Score = 118 bits (130), Expect = 2e-22 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || | || ||||| || | Sbjct 45 CGCCAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCGTGACGAAGCCGGCCA 103 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || || || || || || || ||||| |||| || | |||| || |||| Sbjct 104 TCCGCCGGCTCGCGCGCCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 163 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| || || || ||| |||| Sbjct 164 CGCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 223 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 224 AGCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 283 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 284 GCCGCACGCTCTACGGCTTCGG 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065358399452