Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3953 118 2e-22
>seq3953
Length=312
Score = 118 bits (130), Expect = 2e-22
Identities = 185/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || | || ||||| || |
Sbjct 45 CGCCAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCGTGACGAAGCCGGCCA 103
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || || || || || || || || ||||| |||| || | |||| || ||||
Sbjct 104 TCCGCCGGCTCGCGCGCCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 163
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | ||| |||||||| ||| ||| |||| || || || ||| ||||
Sbjct 164 CGCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 223
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || ||||| |||||| ||||||| ||||||| || | || || || |
Sbjct 224 AGCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 283
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 284 GCCGCACGCTCTACGGCTTCGG 305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79065358399452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |